Browse Element(s) Details


OsAffx.27615.1.S1_at

Description tigr:9634.m01283
TID=OsAffx.27615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1294011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12882Os.49387.1.S1_at11/116+7052690..7055205Zinc finger protein 291, putative, expressed
LOC_Os06g12890NANA6+7058670..7059523hypothetical protein
LOC_Os06g12900Os.35344.18.S1_x_at10/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12900Os.35344.3.S1_x_at9/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12900OsAffx.22940.5.S1_x_at3/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12910OsAffx.15399.1.S1_at11/116+7066118..7068523XPA-binding protein 2, putative
LOC_Os06g12920NANA6+7071754..7072192hypothetical protein
LOC_Os06g12930NANA6+7075783..7077025hypothetical protein
LOC_Os06g12940OsAffx.27615.1.S1_at11/116+7078678..7081436hypothetical protein
LOC_Os06g12940OsAffx.11516.1.S1_x_at1/116+7078678..7081436hypothetical protein
LOC_Os06g12950OsAffx.15400.1.S1_at11/116+7084091..7087529expressed protein
LOC_Os06g12960Os.50155.1.S1_at11/116+7092926..7095195expressed protein
LOC_Os06g12970NANA6+7096595..7101079retrotransposon protein, putative, unclassified
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27615.1.S1_at--599--2051Chr06:7079247..7079271 (25 bp)
ACTTCACGCATTTTGGTGGCATCCA
LOC_Os06g12940
OsAffx.27615.1.S1_at--93--8511Chr06:7079231..7079255 (25 bp)
TGGCATCCACTTCTGTCAACAATGG
LOC_Os06g12940
OsAffx.27615.1.S1_at--158--2891Chr06:7079133..7079157 (25 bp)
AAGGGTCCCTTGTGTATTGATGGCG
LOC_Os06g12940
OsAffx.27615.1.S1_at--931--7691Chr06:7079061..7079085 (25 bp)
GGGTCCTACATTGAGCTTCATACCA
LOC_Os06g12940
OsAffx.27615.1.S1_at--1061--3171Chr06:7078985..7079009 (25 bp)
CAATTACTGGGCTCGCTCTAGAGGA
LOC_Os06g12940
OsAffx.27615.1.S1_at--673--6131Chr06:7078941..7078965 (25 bp)
GAGGGTCAAATCTTACTGGCCAATG
LOC_Os06g12940
OsAffx.27615.1.S1_at--276--831Chr06:7078866..7078890 (25 bp)
ATGGTTCGAATGCTAGCTGCTCTTG
LOC_Os06g12940
OsAffx.27615.1.S1_at--1010--9071Chr06:7078849..7078873 (25 bp)
TGCTCTTGGACAGCCATTACTGACA
LOC_Os06g12940
OsAffx.27615.1.S1_at--160--9731Chr06:7078806..7078830 (25 bp)
TCAAGGAGTTTCCTACTCAACCTTC
LOC_Os06g12940
OsAffx.27615.1.S1_at--1109--611Chr06:7078747..7078771 (25 bp)
ATGCTCCATCTGCAAAAGCACGCTT
LOC_Os06g12940
OsAffx.27615.1.S1_at--978--231Chr06:7078714..7078738 (25 bp)
ATATAGATGTCATGTGCACGCCTCC
LOC_Os06g12940
Target Sequence 
ACTTCACGCATTTTGGTGGCATCCACTTCTGTCAACAATGGCCAAAATATATATGCCTCTGACCAGCCACTATCTACATT
ACCTCCACTTCCTGATTTGGAGATACCCCAAAGAAAGGGTCCCTTGTGTATTGATGGCGATGCCAATGAAAGTGACAATG
ATGATACAGCTACAACCAGCAGTCAGGGGTCCTACATTGAGCTTCATACCATTCAGGATGAGTATGTGATAGGAGGTCCT
TCTTGGGAAGCAATGATTGCGCCAATTACTGGGCTCGCTCTAGAGGAGGAGGAGGAGTTGATGATAGAGGGTCAAATCTT
ACTGGCCAATGATCAGAAAGCGAACCGCCTCATCACTTTGTTTGATGAGGAGGAAAGAGCCATGGTTCGAATGCTAGCTG
CTCTTGGACAGCCATTACTGACAATGGGGACGTTTCCAACATCAAGGAGTTTCCTACTCAACCTTCCCCTGATATTTGTT
TGCAAGGAGAAGGACACAGAATGCTCCATCTGCAAAAGCACGCTTGCTACAAAATATAGATGTCATGTGCACGCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis