Browse Element(s) Details


OsAffx.27595.1.S1_at

Description tigr:9634.m01287
TID=OsAffx.27595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1298010/11Cyclin, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12930NANA6+7075783..7077025hypothetical protein
LOC_Os06g12940OsAffx.27615.1.S1_at11/116+7078678..7081436hypothetical protein
LOC_Os06g12940OsAffx.11516.1.S1_x_at1/116+7078678..7081436hypothetical protein
LOC_Os06g12950OsAffx.15400.1.S1_at11/116+7084091..7087529expressed protein
LOC_Os06g12960Os.50155.1.S1_at11/116+7092926..7095195expressed protein
LOC_Os06g12970NANA6+7096595..7101079retrotransposon protein, putative, unclassified
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27595.1.S1_at--126--10851Chr06:7103837..7103861 (25 bp)
TTGGGCATCCCAATTGCTATGTGTG
LOC_Os06g12980
OsAffx.27595.1.S1_at--386--9591Chr06:7103650..7103674 (25 bp)
TCATTTTTGAACCTCGGACGATCCA
LOC_Os06g12980
OsAffx.27595.1.S1_at--335--9611Chr06:7103614..7103638 (25 bp)
TCATCGTCCTCGTGGAGTTGGATTG
LOC_Os06g12980
OsAffx.27595.1.S1_at--983--1111Chr06:7103577..7103601 (25 bp)
AGTGACGCCTTTCGCCTTTGTTGAT
LOC_Os06g12980
OsAffx.27595.1.S1_at--579--10311Chr06:7103553..7103577 (25 bp)
TTTCTTCGCTTGTAAGGTTGGCTCC
LOC_Os06g12980
OsAffx.27595.1.S1_at--1022--4931Chr06:7103504..7103528 (25 bp)
GCATTGCGTGCTTGCCAAATAATTC
LOC_Os06g12980
OsAffx.27595.1.S1_at--503--7351NONE
GTGCAATTCATGAGCTCGAGTTCCT
NONE
OsAffx.27595.1.S1_at--236--3391Chr06:7102356..7102380 (25 bp)
CAGCGGCGGTGCTATTCGCAGTAAA
LOC_Os06g12980
OsAffx.27595.1.S1_at--690--3431Chr06:7102338..7102362 (25 bp)
CAGTAAATGAGTCGCCTGCAGCCAT
LOC_Os06g12980
OsAffx.27595.1.S1_at--424--9111Chr06:7102077..7102101 (25 bp)
TGCTGCAGCGAGCTCTGAATGCTAC
LOC_Os06g12980
OsAffx.27595.1.S1_at--648--531Chr06:7102032..7102056 (25 bp)
ATCCGATGATACTTGCAGCTTGTTC
LOC_Os06g12980
Target Sequence 
TTGGGCATCCCAATTGCTATGTGTGGCTTGCTTGTCTCTGGCTGCCAAGATGGAGGAGTCCTCTGCCCCACCCCTCCTTG
ACCTTCAGATTGAAGGAACAAGATTCATTTTTGAACCTCGGACGATCCAGAGGATGGAGCTCATCGTCCTCGTGGAGTTG
GATTGGAGGCTCCGGTCAGTGACGCCTTTCGCCTTTGTTGATTTCTTCGCTTGTAAGGTTGGCTCCTCTGGAAGAAGCTC
AAGGATCTTGGCATTGCGTGCTTGCCAAATAATTCTCAGTGCAATTCATGAGCTCGAGTTCCTGAACCACTGCGCCTCAT
CAATGGCGGCAGCGGCGGTGCTATTCGCAGTAAATGAGTCGCCTGCAGCCATGTCGCACAGGAGCAGCGTCAGCTCTGAA
TCAGCTGCCTCGTGGTGCATTGGCCTGACTGAGGAGAGGATCAGCAGTTGCTATCAGCTGCTGCAGCGAGCTCTGAATGC
TACTGCGAGGAAGAGGAAGCGACATCCGATGATACTTGCAGCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis