Browse Element(s) Details


OsAffx.27598.1.S1_at

Description tigr:9634.m01290
TID=OsAffx.27598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T23E23.25
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1301010/11RNase H domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12970NANA6+7096595..7101079retrotransposon protein, putative, unclassified
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27598.1.S1_at--229--2731Chr06:7125042..7125066 (25 bp)
AAGCACGCCAAGATCAGGTTCTGCT
LOC_Os06g13010
OsAffx.27598.1.S1_at--371--1011Chr06:7125057..7125081 (25 bp)
AGGTTCTGCTGCGTGCAGTCCAAGG
LOC_Os06g13010
OsAffx.27598.1.S1_at--460--1631Chr06:7125088..7125112 (25 bp)
AGCCGTACCTGAGACTGGTCGGGAT
LOC_Os06g13010
OsAffx.27598.1.S1_at--93--9131Chr06:7125130..7125154 (25 bp)
TGCGGCGAGTCCTCTTCATCGAGGG
LOC_Os06g13010
OsAffx.27598.1.S1_at--449--8431Chr06:7125154..7125178 (25 bp)
GGCCTGAGGCCTACTACGAGGGATC
LOC_Os06g13010
OsAffx.27598.1.S1_at--649--1871NONE
ACGAGGGATCCACAGCTGCTTTGAA
NONE
OsAffx.27598.1.S1_at--1136--10731Chr06:7126329..7126353 (25 bp)
TTGAAAGTTGCATCGTACCTGCCTC
LOC_Os06g13010
OsAffx.27598.1.S1_at--301--9911Chr06:7126359..7126383 (25 bp)
TACTCAGCTTTGAGCTCCCTGCTGA
LOC_Os06g13010
OsAffx.27598.1.S1_at--442--4351Chr06:7126395..7126419 (25 bp)
CCACTGCGGGATGCAATCTACGATT
LOC_Os06g13010
OsAffx.27598.1.S1_at--265--3051Chr06:7126431..7126455 (25 bp)
AATCGCTACGATTGGTTTGGCAAGG
LOC_Os06g13010
OsAffx.27598.1.S1_at--63--6331Chr06:7126458..7126482 (25 bp)
GATGAATGCATCGTTACCAAGAACA
LOC_Os06g13010
Target Sequence 
AAGCACGCCAAGATCAGGTTCTGCTGCGTGCAGTCCAAGGCCGCGGAGCCGTACCTGAGACTGGTCGGGATGGACAGGGA
GGACGTGCTGCGGCGAGTCCTCTTCATCGAGGGGCCTGAGGCCTACTACGAGGGATCCACAGCTGCTTTGAAAGTTGCAT
CGTACCTGCCTCTTCCCTACTCAGCTTTGAGCTCCCTGCTGATCATCCCCGCCCCACTGCGGGATGCAATCTACGATTAC
ATTGCAAAGAATCGCTACGATTGGTTTGGCAAGGATGATGAATGCATCGTTACCAAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis