Browse Element(s) Details


OsAffx.27599.1.S1_at

Description tigr:9634.m01293
TID=OsAffx.27599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1305011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27599.1.S1_at--659--6431Chr06:7148337..7148361 (25 bp)
GATCATCAATGAATCTTTGACTTCA
LOC_Os06g13050
OsAffx.27599.1.S1_at--513--5251Chr06:7148327..7148351 (25 bp)
GAATCTTTGACTTCACTTGACCTGG
LOC_Os06g13050
OsAffx.27599.1.S1_at--168--451Chr06:7148325..7148349 (25 bp)
ATCTTTGACTTCACTTGACCTGGGC
LOC_Os06g13050
OsAffx.27599.1.S1_at--21--8951Chr06:7148320..7148344 (25 bp)
TGACTTCACTTGACCTGGGCTTTAA
LOC_Os06g13050
OsAffx.27599.1.S1_at--683--10511Chr06:7148316..7148340 (25 bp)
TTCACTTGACCTGGGCTTTAATGAG
LOC_Os06g13050
OsAffx.27599.1.S1_at--3--8931Chr06:7148310..7148334 (25 bp)
TGACCTGGGCTTTAATGAGATTAGA
LOC_Os06g13050
OsAffx.27599.1.S1_at--403--711Chr06:7148183..7148207 (25 bp)
ATGATGGAGCATTTGCATTGGCACA
LOC_Os06g13050
OsAffx.27599.1.S1_at--328--5931Chr06:7148177..7148201 (25 bp)
GAGCATTTGCATTGGCACAAGCACT
LOC_Os06g13050
OsAffx.27599.1.S1_at--726--191Chr06:7148173..7148197 (25 bp)
ATTTGCATTGGCACAAGCACTTAAA
LOC_Os06g13050
OsAffx.27599.1.S1_at--151--1571Chr06:7148149..7148173 (25 bp)
AGCTAATGAAGATCTTGCAGTCACA
LOC_Os06g13050
OsAffx.27599.1.S1_at--1043--2991Chr06:7148145..7148169 (25 bp)
AATGAAGATCTTGCAGTCACATCAT
LOC_Os06g13050
Target Sequence 
GATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAG
CACTTAAAGCTAATGAAGATCTTGCAGTCACATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis