Browse Element(s) Details


OsAffx.27597.1.S1_at

Description tigr:9634.m01289
TID=OsAffx.27597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF026167 ankyrin repeat protein EMB506
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1300011/11Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os10g138701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12960Os.50155.1.S1_at11/116+7092926..7095195expressed protein
LOC_Os06g12970NANA6+7096595..7101079retrotransposon protein, putative, unclassified
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27597.1.S1_at--82--5911Chr06:7121550..7121574 (25 bp)
GAGCTTCTCTTGACGCCTGAAGAAA
LOC_Os06g13000
OsAffx.27597.1.S1_at--981--551Chr06:7121520..7121544 (25 bp)
ATCCTGGATCAGAACGAGACCCCGG
LOC_Os06g13000
OsAffx.27597.1.S1_at--681--5911Chr06:7121505..7121529 (25 bp)
GAGACCCCGGATATCACCAAAATAT
LOC_Os06g13000
OsAffx.27597.1.S1_at--1002--8271Chr06:7121319..7121343 (25 bp)
GGCATCCACTTCATAGTTACGCATT
LOC_Os06g13000
OsAffx.27597.1.S1_at--528--9051Chr06:7121289..7121313 (25 bp)
TGCAGATACCTCTCATGGACAGCCT
LOC_Os06g13000
OsAffx.27597.1.S1_at--1080--8511Chr06:7121274..7121298 (25 bp)
TGGACAGCCTGCTCGATAGTGGTGT
LOC_Os06g13000
OsAffx.27597.1.S1_at--709--9591Chr06:7121016..7121040 (25 bp)
TCATTAGCCATCTCCTGCGAAGAGG
LOC_Os06g13000
OsAffx.27597.1.S1_at--776--8091Chr06:7120753..7120777 (25 bp)
GGAGCCACACCATTACATTATGCAG
LOC_Os06g13000
OsAffx.27597.1.S1_at--263--3451Chr06:7120731..7120755 (25 bp)
CAGTTCAAGTTGGTGCCCTGCAAAC
LOC_Os06g13000
OsAffx.27597.1.S1_at--953--9751Chr06:7120571..7120591 (21 bp)
TAATGATGGCTGGACACCGTTGCAT
LOC_Os06g13000
OsAffx.27597.1.S1_at--1138--8113Chr03:15213908..15213932 (25 bp)
GGACACCGTTGCATTTAGCTATACA
NONE
Target Sequence 
GAGCTTCTCTTGACGCCTGAAGAAATGGCTATCCTGGATCAGAACGAGACCCCGGATATCACCAAAATATCATCACCGAA
ATGGCATCCACTTCATAGTTACGCATTGGCGCTGCAGATACCTCTCATGGACAGCCTGCTCGATAGTGGTGTCGATATCA
ATTTACTTGACAAAGATGGTTTCACCCCACTTCACAAGGCTGTCATAGGCAAAAAGGAGGCCGTCATTAGCCATCTCCTG
CGAAGAGGGGCAAATCCTCATGTCAGAGATAGGGATGGAGCCACACCATTACATTATGCAGTTCAAGTTGGTGCCCTGCA
AACTGTGAAGTTACTGATTAAGAATAGGGTTGATGTCAATGTTGCTGATAATGATGGCTGGACACCGTTGCATTTAGCTA
TACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis