Browse Element(s) Details


OsAffx.11516.1.S1_x_at

Description gb:NM_191987.1
DB_XREF= gi:34911057
GEN=P0007F06.24
TID=OsAffx.11516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0007F06.24 (P0007F06.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4831010/11expressed protein
LOC_Os06g129401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11516.1.S1_x_at--104--3291Chr01:28011567..28011591 (25 bp)
CAAACTGTCGCATTCGCGGGACAAT
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--1125--8951Chr01:28011513..28011537 (25 bp)
TGAACCAAGCTCTGTAGCCACTAAT
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--539--6251Chr01:28011455..28011479 (25 bp)
GATGGTAGCTCCACATGGCTATCGA
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--326--3751Chr01:28011419..28011443 (25 bp)
CTCAACTACCCACTTCTTGATGAGA
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--679--10271Chr01:28011356..28011380 (25 bp)
TTTGCACGCAGGCTTCAGGAGCAGT
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--50--1511Chr01:28011322..28011346 (25 bp)
AGCAGCCAGGCTCGCAAAACTTAGA
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--844--7911Chr01:28011011..28011035 (25 bp)
GGTTGATACAACACTAGCCTGGACA
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--565--451NONE
ATCTAGCTCTCGCATGGCAATACTG
NONE
OsAffx.11516.1.S1_x_at--401--8511Chr01:28009780..28009804 (25 bp)
TGGCAATACTGGATTCACTCGAAGA
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--681--8791Chr01:28009181..28009205 (25 bp)
TGTTCTGATGAACCCTGTCCTATAT
LOC_Os01g48310
OsAffx.11516.1.S1_x_at--1107--7912Chr06:7080741..7080783 (24 bp)
GGATTGCCCTGCTGCTGGTGAATAC
LOC_Os06g12940
Target Sequence 
CAAACTGTCGCATTCGCGGGACAATGGCAAGAGAGAAGATGAGGTTCCAATGCATGAACCAAGCTCTGTAGCCACTAATG
AAGTTACTGGAGCTGGTGATGTTTCCATGGAAGATGGTAGCTCCACATGGCTATCGAGGATCAAGGGGCTCAACTACCCA
CTTCTTGATGAGAATCAGTTAAGAACCAGACAAATTGAATCCGATGAGGAGTTTGCACGCAGGCTTCAGGAGCAGTTAAA
CAAGGAGCAGCCAGGCTCGCAAAACTTAGAAGAGGTTGATACAACACTAGCCTGGACATTGCAAGAGGAAGATGTGGAAC
ACGCTAGAAATGCTGTCAGAGAGGGCCAATCTAGCTCTCGCATGGCAATACTGGATTCACTCGAAGAAGCATTTGGAAAC
TTCGGAGAGGAATTTATGTCAGAATCTGATGAGGAGAGAGTTGTTCTGATGAACCCTGTCCTATATGCCTGGATTGCCCT
GCTGCTGGTGAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11516.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis