Browse Element(s) Details


OsAffx.12843.1.S1_at

Description tigr:9631.m01290
TID=OsAffx.12843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g483301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12843.1.S1_at--1096--4171Chr03:7325053..7325077 (25 bp)
CCCAGCACGTTTTCAGTGACCCAGA
NONE
OsAffx.12843.1.S1_at--965--1412Chr03:7325031..7325055 (25 bp)
AGACAACTCCTCTGCTCACATTGAG
NONE
OsAffx.12843.1.S1_at--670--4831Chr03:7325018..7325042 (25 bp)
GCTCACATTGAGTCTCTTCATCTGG
NONE
OsAffx.12843.1.S1_at--552--9612Chr02:23549756..23549780 (25 bp)
TCATCTGGGTTATGTCTGCCTGAAC
NONE
OsAffx.12843.1.S1_at--209--772Chr02:23549767..23549791 (25 bp)
ATGTCTGCCTGAACACAGTTGCTAC
NONE
OsAffx.12843.1.S1_at--367--2192Chr02:23549779..23549800 (22 bp)
ACACAGTTGCTACCACTGGTTTTGC
NONE
OsAffx.12843.1.S1_at--946--10391Chr03:7324959..7324983 (25 bp)
TTTTGCTGGCTTTGCCAACACTCAT
NONE
OsAffx.12843.1.S1_at--871--2471Chr03:7324731..7324967 (25 bp)
AACACTCATCTTATGTTGCAAGGAT
NONE
OsAffx.12843.1.S1_at--972--6571Chr03:7324688..7324712 (25 bp)
GATTCGTCAATTTGAGGCGCCAGCT
NONE
OsAffx.12843.1.S1_at--164--4772Chr09:20214312..20214331 (20 bp)
GCTGCGGCACCCACGGCATGAACGT
NONE
OsAffx.12843.1.S1_at--438--4091Chr03:7324480..7324504 (25 bp)
CGACGTGCACCGACGACGAACCAAG
NONE
Target Sequence 
CCCAGCACGTTTTCAGTGACCCAGACAACTCCTCTGCTCACATTGAGTCTCTTCATCTGGGTTATGTCTGCCTGAACACA
GTTGCTACCACTGGTTTTGCTGGCTTTGCCAACACTCATCTTATGTTGCAAGGATTTGCCAAAACCTCAGCGAGATTCGT
CAATTTGAGGCGCCAGCTGCGGCACCCACGGCATGAACGTGTCGTACAACACCACCGTCGCCGGCCTCCCCTGCTCCGCC
TCTTCCCAGACCAGCTCGTCCAGCGCCACCGACCCGACCTCCTCCAGCCGCTCGAAGTACGGGCCACGGTGGCCGCCGAG
ATCCGCTGGGCCGCCCTCGTCGCAGCCGTCGGAGAACACCACGACGTGCACCGACGACGAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis