Browse Element(s) Details


Os.14354.1.S1_at

Description gb:AK122067.1
DB_XREF= gi:37991713
TID=Os.14354.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ubiquitin-conjugating enzyme E2 (P0007F06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117D10, full insert sequence.
FL= gb:AK122067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4828011/11Ubiquitin-conjugating enzyme E2 N, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14354.1.S1_at--816--6291Chr01:27995883..27995907 (25 bp)
GATGATCCTCTCTCTGATAACATTG
LOC_Os01g48280
Os.14354.1.S1_at--512--2311Chr01:27995724..27995748 (25 bp)
AAAGGAGTGGACTCGCCTGTATGCC
LOC_Os01g48280
Os.14354.1.S1_at--1047--1811Chr01:27995686..27995710 (25 bp)
ACCCAATGCCTCTCGTGATGTAATA
LOC_Os01g48280
Os.14354.1.S1_at--1013--9731Chr01:27995666..27995690 (25 bp)
TAATAACCCGTCATGCTTTAGCCTT
LOC_Os01g48280
Os.14354.1.S1_at--108--10191Chr01:27995552..27995576 (25 bp)
TATACATGTGGTTGGTTCCCTTTAC
LOC_Os01g48280
Os.14354.1.S1_at--483--8571Chr01:27995431..27995455 (25 bp)
TGGATCTTTGTTCGTGTGGCTGCAC
LOC_Os01g48280
Os.14354.1.S1_at--135--8671Chr01:27995417..27995441 (25 bp)
TGTGGCTGCACTTTGTACCCTCTAG
LOC_Os01g48280
Os.14354.1.S1_at--85--2251Chr01:27995333..27995357 (25 bp)
AAATCGGTTGCGGTTGTCGTCGACT
LOC_Os01g48280
Os.14354.1.S1_at--1066--3531Chr01:27995303..27995327 (25 bp)
CATCGTCTTGCCACTTTGTTGGCAA
LOC_Os01g48280
Os.14354.1.S1_at--180--7011Chr01:27995277..27995301 (25 bp)
GTACTACCGTACTTGTATGCCTGTA
LOC_Os01g48280
Os.14354.1.S1_at--727--6911Chr01:27995263..27995287 (25 bp)
GTATGCCTGTAGCTTGTCAACTGCA
LOC_Os01g48280
Target Sequence 
GATGATCCTCTCTCTGATAACATTGCAAAGCACTGGAAAGCCAATGAAGCAGAAGCTGTTGAAACAGCAAAGGAGTGGAC
TCGCCTGTATGCCAGCGGTGCATAAAACCCAATGCCTCTCGTGATGTAATAACCCGTCATGCTTTAGCCTTAATCAAATG
CCATTTGCTTGATAAGAACAAACTGGAGATATTGGCAGTGGAAGGGAGTTTAAATGACTACCGCTTGAATTATTTGTCTG
TATACATGTGGTTGGTTCCCTTTACCCTAGGGCACCCTTNGACTAATCAGTATCTGTGGTAGAACTTGGTGCTCCTCCAA
TATATTTATTACTTTATGTTGGAAAACTTAAATTGTTGAAATTGGATCTTTGTTCGTGTGGCTGCACTTTGTACCCTCTA
GNTTCTGTTACCTGGGAAATGNGAGATCGTTCCGACGAAGCCTGANGGGACGATTTGGCAAAATCGGTTGCGGTTGTCGT
CGACTTGTGGCATCGTCTTGCCACTTTGTTGGCAAAGTACTACCGTACTTGTATGCCTGTAGCTTGTCAACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis