Browse Element(s) Details


Os.41746.1.S1_at

Description gb:CB649714
DB_XREF= gi:29644707
DB_XREF=OSJNEb13M22.r
CLONE=OSJNEb13M22
TID=Os.41746.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.41746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.19 (P0007F06.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g482508/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48220Os.6738.1.S1_at11/111+27957871..27960305expressed protein
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41746.1.S1_at--747--5811Chr01:27984391..27984415 (25 bp)
GACGCCAACGTCGACATGTGCGACT
LOC_Os01g48250
Os.41746.1.S1_at--1017--771Chr01:27984406..27984430 (25 bp)
ATGTGCGACTCCATGGTGATGAACA
LOC_Os01g48250
Os.41746.1.S1_at--262--8071Chr01:27984434..27984458 (25 bp)
GGAGCAGGTACAACATGGGCATTTA
LOC_Os01g48250
Os.41746.1.S1_at--250--71Chr01:27984495..27984519 (25 bp)
ATTCCCTCGTGGATTTACCGCGGAT
LOC_Os01g48250
Os.41746.1.S1_at--475--8711Chr01:27984540..27984564 (25 bp)
TGTCCCCTGATCCATATCGTGCAAA
LOC_Os01g48250
Os.41746.1.S1_at--49--5591Chr01:27984573..27984597 (25 bp)
GAAATGTTGTGGTAGTCCCTGGCTA
LOC_Os01g48250
Os.41746.1.S1_at--93--7251Chr01:27984587..27984611 (25 bp)
GTCCCTGGCTAGTGGCTAGTAGTAC
LOC_Os01g48250
Os.41746.1.S1_at--824--10051NONE
TAGTAGTACCTTTTGCTCTGGCTTA
NONE
Os.41746.1.S1_at--163--10291NONE
TTTGCTCTGGCTTAGATTTCTCCGA
NONE
Os.41746.1.S1_at--260--6531NONE
GATTTCTCCGATTTTGCATGTTTGT
NONE
Os.41746.1.S1_at--735--2291Chr01:27984685..27984709 (25 bp)
AAATGTACCTTGAGTTCTTGATATG
LOC_Os01g48250
Target Sequence 
GACGCCAACGTCGACATGTGCGACTCCATGGTGATGAACAACGGGAGCAGGTACAACATGGGCATTTACAGGGATGGTAA
GAAGATCAGAGCCGGCTCCCGGCAATTCCCTCGTGGATTTACCGCGGATTGCTCGCCTCCAATCTGGCTTGTCCCCTGAT
CCATATCGTGCAAAGGATCAGTGAAATGTTGTGGTAGTCCCTGGCTAGTGGCTAGTAGTACCTTTTGCTCTGGCTTAGAT
TTCTCCGATTTTGCATGTTTGTGCTATAGAGGCAGACTAGTATCTATCAAAAGAAAATGTACCTTGAGTTCTTGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis