Browse Element(s) Details


Os.25062.2.S1_a_at

Description gb:AK072055.1
DB_XREF= gi:32982078
TID=Os.25062.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.23 (P0007F06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110J02, full insert sequence.
FL= gb:AK072055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4830011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25062.2.S1_a_at--703--111Chr01:28004460..28004484 (25 bp)
ATTCTCCATGACATCTGTTACACTC
LOC_Os01g48300
Os.25062.2.S1_a_at--321--471Chr01:28004448..28004472 (25 bp)
ATCTGTTACACTCTCATTTGTTCAA
LOC_Os01g48300
Os.25062.2.S1_a_at--505--1311Chr01:28004409..28004433 (25 bp)
AGAGGTCAAGTACACACACCTACCC
LOC_Os01g48300
Os.25062.2.S1_a_at--1019--9951Chr01:28004389..28004413 (25 bp)
TACCCCGTACATTCCATTTATTGCA
LOC_Os01g48300
Os.25062.2.S1_a_at--731--10331Chr01:28004373..28004397 (25 bp)
TTTATTGCACGCCTACGGACTACAG
LOC_Os01g48300
Os.25062.2.S1_a_at--402--8131Chr01:28004357..28004381 (25 bp)
GGACTACAGCAACTCTCAGCATTGT
LOC_Os01g48300
Os.25062.2.S1_a_at--126--351Chr01:28004218..28004242 (25 bp)
ATAAATCACGGCTCAATCTGCCACT
LOC_Os01g48300
Os.25062.2.S1_a_at--414--8831Chr01:28004192..28004216 (25 bp)
TGATTCATCATCTCATTGCCTCGAG
LOC_Os01g48300
Os.25062.2.S1_a_at--783--10292Chr01:28004090..28004114 (25 bp)
TTTCCTTTTCTTATCTCTTTCGTTG
LOC_Os01g48300
Os.25062.2.S1_a_at--112--10431Chr01:28004080..28004104 (25 bp)
TTATCTCTTTCGTTGCTGGCCTCAT
LOC_Os01g48300
Os.25062.2.S1_a_at--861--4451Chr01:28004062..28004086 (25 bp)
GCCTCATCCATTTGGCCACCAAAAG
LOC_Os01g48300
Target Sequence 
ATTCTCCATGACATCTGTTACACTCTCATTTGTTCAAAAAGATGATTGGCAAGAGGTCAAGTACACACACCTACCCCGTA
CATTCCATTTATTGCACGCCTACGGACTACAGCAACTCTCAGCATTGTCACAGGTACCACATGAACACATGATCTATTGA
ATGACTTATGGAGTAATTAACTGTGAATGGTGCAGAGCCAAAACATGGGCAACCAAAAGAACTCAAGAAGACGAAGATTT
CAATAAATCACGGCTCAATCTGCCACTCTGATTCATCATCTCATTGCCTCGAGGCCTGCTGCTGCTGCTAGTAGTAGTAG
TACATTCATTTGAACTGCCTACCAATTTTGAAAGCACCCAAATTTCCAAATTTCCTTTTCTTATCTCTTTCGTTGCTGGC
CTCATCCATTTGGCCACCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25062.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis