Browse Element(s) Details


OsAffx.23712.1.S1_at

Description tigr:9629.m04652
TID=OsAffx.23712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4834011/11hypothetical protein
LOC_Os06g231702/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23712.1.S1_at--669--8971Chr01:28031532..28031556 (25 bp)
TGAAGGACGTCACCGATGGGACACT
LOC_Os01g48340
OsAffx.23712.1.S1_at--882--6251Chr01:28031518..28031542 (25 bp)
GATGGGACACTGCTGCCGCTCTACC
LOC_Os01g48340
OsAffx.23712.1.S1_at--710--10692Chr06:13525545..13525568 (24 bp)
TTGCCGCGCTTGTCCAGGAGGCTCA
LOC_Os06g23170
OsAffx.23712.1.S1_at--590--9211Chr01:28031440..28031464 (25 bp)
TCCAGGAGGCTCACCAAAGTTATTG
LOC_Os01g48340
OsAffx.23712.1.S1_at--751--10392Chr06:13525574..13525598 (25 bp)
TTATTGGAAGGGATCGTCGAGGCTT
LOC_Os06g23170
OsAffx.23712.1.S1_at--671--4771Chr01:28031370..28031394 (25 bp)
GCTCGACGGCGAGGAAAAACTCCGT
LOC_Os01g48340
OsAffx.23712.1.S1_at--1150--5511Chr01:28031357..28031381 (25 bp)
GAAAAACTCCGTGTTGACGACAACG
LOC_Os01g48340
OsAffx.23712.1.S1_at--1130--5771Chr01:28031342..28031366 (25 bp)
GACGACAACGGCTCGATCTACTCGA
LOC_Os01g48340
OsAffx.23712.1.S1_at--308--6411Chr01:28031328..28031352 (25 bp)
GATCTACTCGAAGAGCTGCCATGTA
LOC_Os01g48340
OsAffx.23712.1.S1_at--50--1371Chr01:28031317..28031341 (25 bp)
AGAGCTGCCATGTATGCACACGGAT
LOC_Os01g48340
OsAffx.23712.1.S1_at--969--9011Chr01:28031303..28031327 (25 bp)
TGCACACGGATGGTGTTATGGACGT
LOC_Os01g48340
Target Sequence 
TGAAGGACGTCACCGATGGGACACTGCTGCCGCTCTACCGACCGCCGTCCCGCCTAGCATCTACCCCCTCTGCCGCCCCG
TTGCCGCGCTTGTCCAGGAGGCTCACCAAAGTTATTGGAAGGGATCGTCGAGGCTTGGACAGCAGCGGCTTCGGTTGGAA
TGGCTCGACGGCGAGGAAAAACTCCGTGTTGACGACAACGGCTCGATCTACTCGAAGAGCTGCCATGTATGCACACGGAT
GGTGTTATGGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis