Browse Element(s) Details


OsAffx.21509.1.S1_at

Description tigr:9629.m04654
TID=OsAffx.21509.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4836011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21509.1.S1_at--897--3471Chr01:28041728..28041752 (25 bp)
CAGGAGGTGGCCATGTCGCAATTCG
LOC_Os01g48360
OsAffx.21509.1.S1_at--1032--1051Chr01:28041732..28041756 (25 bp)
AGGTGGCCATGTCGCAATTCGTCGC
LOC_Os01g48360
OsAffx.21509.1.S1_at--630--771Chr01:28041740..28041764 (25 bp)
ATGTCGCAATTCGTCGCGCAGCTAG
LOC_Os01g48360
OsAffx.21509.1.S1_at--748--3151Chr01:28041747..28041771 (25 bp)
AATTCGTCGCGCAGCTAGGCATGTG
LOC_Os01g48360
OsAffx.21509.1.S1_at--308--5071Chr01:28041757..28041781 (25 bp)
GCAGCTAGGCATGTGCGAAGCCTCC
LOC_Os01g48360
OsAffx.21509.1.S1_at--792--771Chr01:28041767..28041791 (25 bp)
ATGTGCGAAGCCTCCGCTCGAGTAG
LOC_Os01g48360
OsAffx.21509.1.S1_at--997--5411Chr01:28041773..28041797 (25 bp)
GAAGCCTCCGCTCGAGTAGCGAAAG
LOC_Os01g48360
OsAffx.21509.1.S1_at--1037--9991Chr01:28041789..28041893 (25 bp)
TAGCGAAAGCATTTTACGAGGCGGC
LOC_Os01g48360
OsAffx.21509.1.S1_at--53--2711Chr01:28041795..28041899 (25 bp)
AAGCATTTTACGAGGCGGCGCGGAA
LOC_Os01g48360
OsAffx.21509.1.S1_at--451--8531Chr01:28041905..28041929 (25 bp)
TGGACAGCATGAACCAGAGGCTCAG
LOC_Os01g48360
OsAffx.21509.1.S1_at--1011--1711Chr01:28041917..28041941 (25 bp)
ACCAGAGGCTCAGGTGGCTGGAGCA
LOC_Os01g48360
Target Sequence 
CAGGAGGTGGCCATGTCGCAATTCGTCGCGCAGCTAGGCATGTGCGAAGCCTCCGCTCGAGTAGCGAAAGCATTTTACGA
GGCGGCGCGGAAGAGGCTGGACAGCATGAACCAGAGGCTCAGGTGGCTGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis