Browse Element(s) Details


Os.17708.1.S1_at

Description gb:NM_191994.1
DB_XREF= gi:34911071
GEN=P0485G01.23
TID=Os.17708.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485G01.23 (P0485G01.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0485G01.23 (P0485G01.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4838011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17708.1.S1_at--547--1851Chr01:28057371..28057395 (25 bp)
ACGAAGGCACCTTCGTATGGTGCTT
LOC_Os01g48380
Os.17708.1.S1_at--219--2312Chr01:28058018..28058042 (25 bp)
AAAGATTTTGCCTGAAACTGAGACA
LOC_Os01g48380
Os.17708.1.S1_at--65--6271Chr01:28058061..28058085 (25 bp)
GATGTCCTGCATCAATACCTTTCAG
LOC_Os01g48380
Os.17708.1.S1_at--66--6011Chr01:28058086..28058110 (25 bp)
GAGAGCAAGATACGCAATGTTTCAT
LOC_Os01g48380
Os.17708.1.S1_at--997--731Chr01:28058102..28058126 (25 bp)
ATGTTTCATCCATGTCCTGGTTCAA
LOC_Os01g48380
Os.17708.1.S1_at--142--1111Chr01:28058209..28058233 (25 bp)
AGTGGTCACTCTGATTCTTTGTATC
LOC_Os01g48380
Os.17708.1.S1_at--648--6811Chr01:28058269..28058293 (25 bp)
GTTTCCACCTCTGTAGAAAAGGCGT
LOC_Os01g48380
Os.17708.1.S1_at--1052--5511Chr01:28058284..28058308 (25 bp)
GAAAAGGCGTCTTCTGATCAGCAGA
LOC_Os01g48380
Os.17708.1.S1_at--655--9471Chr01:28058296..28058320 (25 bp)
TCTGATCAGCAGATGCTTCCCTGTA
LOC_Os01g48380
Os.17708.1.S1_at--1035--191Chr01:28058749..28058773 (25 bp)
ATTTCTGGGTCAATTACACACATAG
LOC_Os01g48380
Os.17708.1.S1_at--760--3291Chr01:28058765..28058789 (25 bp)
CACACATAGATGTCCTCGCATAATG
LOC_Os01g48380
Target Sequence 
ACGAAGGCACCTTCGTATGGTGCTTGATGCATATAGGAACGGGAAGGANCAGTTATTGGAAGATGTATGGGACTACATGT
NCCNATATGGCCGAGTTCCGCCTGCCCCCATGATAATGGAAAGATTTTGCCTGAAACTGAGACAAGGGGACACAGTGGCG
GCGATGTCCTGCATCAATACCTTTCAGGAGAGCAAGATACGCAATGTTTCATCCATGTCCTGGTTCAATCTGCTGAACCG
TAATGGGGATCGCTTGAAGGAGGATATTATTATCAAGCTACTTCATGAACTCAACAACCTTGTAAGCTCAAGTGGTCACT
CTGATTCTTTGTATCAAAATATTATAAGTAGCTGTACAGAATTCCTTTCTGTTTCCACCTCTGTAGAAAAGGCGTCTTCT
GATCAGCAGATGCTTCCCTGTACNNNATAGTTACTATATATTANTATGCCATTATCTAAAAGAAAATCAGAGTTTGGTCA
TTGGAAGAGCTACAGGTGTGAAAATTTCTGGGTCAATTACACACATAGATGTCCTCGCATAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis