Browse Element(s) Details


Os.39012.1.S1_s_at

Description gb:AU097486
DB_XREF= gi:8860168
DB_XREF=AU097486
CLONE=S5304
TID=Os.39012.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39012 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:O22711 (A.thaliana) F825_ARATH Hypothetical protein At1g60740
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4842011/11AhpC/TSA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39012.1.S1_s_at--820--7911Chr01:28072962..28072986 (25 bp)
GGCTTGGTATTCGTTCGAGACGGTT
LOC_Os01g48420
Os.39012.1.S1_s_at--950--10211Chr01:28072955..28072979 (25 bp)
TATTCGTTCGAGACGGTTTGCTCTC
LOC_Os01g48420
Os.39012.1.S1_s_at--240--10611Chr01:28072949..28072973 (25 bp)
TTCGAGACGGTTTGCTCTCCTTGCT
LOC_Os01g48420
Os.39012.1.S1_s_at--878--2631Chr01:28072921..28072945 (25 bp)
AACCTCAAGGTTACTGTTGCAAACA
LOC_Os01g48420
Os.39012.1.S1_s_at--430--9731Chr01:28072851..28072875 (25 bp)
TCAAGGCACTGTAAGAGCTTCAGCT
LOC_Os01g48420
Os.39012.1.S1_s_at--494--5911Chr01:28072837..28072861 (25 bp)
GAGCTTCAGCTCTTAGGAACGGCAG
LOC_Os01g48420
Os.39012.1.S1_s_at--693--2571Chr01:28072820..28072844 (25 bp)
AACGGCAGCGATCACTTGGACCTAT
LOC_Os01g48420
Os.39012.1.S1_s_at--617--6451Chr01:28072811..28072835 (25 bp)
GATCACTTGGACCTATCGTGTCAAT
LOC_Os01g48420
Os.39012.1.S1_s_at--1048--8091Chr01:28072803..28072827 (25 bp)
GGACCTATCGTGTCAATCTTGTTTA
LOC_Os01g48420
Os.39012.1.S1_s_at--240--431Chr01:28072788..28072812 (25 bp)
ATCTTGTTTAAATTTGTCTGCAAAA
LOC_Os01g48420
Os.39012.1.S1_s_at--576--8771Chr01:28072707..28072731 (25 bp)
TGTTTGAATCTGTATCCACTGTTGA
LOC_Os01g48420
Target Sequence 
GGCTTGGTATTCGTTCGAGACGGTTTGCTCTCCTTGCTGACAACCTCAAGGTTACTGTTGCAAACATTGAGGAAGGTGGC
CAANTTCACAATCTCTGGTGCTGNGGANGATCCTCAAGGCACTGTAAGAGCTTCAGCTCTTAGGAACGGCAGCGATCACT
TGGACCTATCGTGTCAATCTTGTTTAAATTTGTCTGCAAAATACTTGTGCGAATAAAATTGTCGATGAGCNNNCTAGTTG
TGAGGACTTTATGATAATGTTTGAATCTGTATCCACTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39012.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis