Browse Element(s) Details


Os.6355.1.S1_at

Description gb:AK100701.1
DB_XREF= gi:32985910
TID=Os.6355.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485G01.25 (P0485G01.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114N21, full insert sequence.
FL= gb:AK100701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4841011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6355.1.S1_at--528--6911Chr01:28071442..28071466 (25 bp)
GTATGCCATCTTGGAGAGCTACTCC
LOC_Os01g48410
Os.6355.1.S1_at--77--8131Chr01:28071468..28071492 (25 bp)
GGACTCTTGAGAGCTTAGCCTTTGC
LOC_Os01g48410
Os.6355.1.S1_at--702--4891Chr01:28071480..28071504 (25 bp)
GCTTAGCCTTTGCAGTTTTATCTCG
LOC_Os01g48410
Os.6355.1.S1_at--419--7971Chr01:28071504..28071528 (25 bp)
GGATCGAGGATGTTCTTCACGCTGA
LOC_Os01g48410
Os.6355.1.S1_at--444--4751Chr01:28071524..28071548 (25 bp)
GCTGATGCCATTGCTAGAGACCCAA
LOC_Os01g48410
Os.6355.1.S1_at--61--5291Chr01:28071567..28071591 (25 bp)
GAAGGCCCAGTCTAGTTGACATCCC
LOC_Os01g48410
Os.6355.1.S1_at--735--8951Chr01:28071583..28071607 (25 bp)
TGACATCCCCGAGATCATTGACAAT
LOC_Os01g48410
Os.6355.1.S1_at--701--5851Chr01:28071658..28071682 (25 bp)
GACCAACAACTCTATTCACTGGCAA
LOC_Os01g48410
Os.6355.1.S1_at--853--5571Chr01:28071718..28071742 (25 bp)
GAAAGTCCACCGCATGGTCACAAAG
LOC_Os01g48410
Os.6355.1.S1_at--925--2151Chr01:28071832..28071856 (25 bp)
ACAGCTGCATGCTTGGTTGTGCTAC
LOC_Os01g48410
Os.6355.1.S1_at--355--10871Chr01:28071918..28071942 (25 bp)
TTGGCGGTGTAATCTGCTCATCTCA
LOC_Os01g48410
Target Sequence 
GTATGCCATCTTGGAGAGCTACTCCAGGACTCTTGAGAGCTTAGCCTTTGCAGTTTTATCTCGGATCGAGGATGTTCTTC
ACGCTGATGCCATTGCTAGAGACCCAAAGCGCACGAAATCAAGGAGAAGGCCCAGTCTAGTTGACATCCCCGAGATCATT
GACAATGCACTGGAGGAAGAGGAGACTGTGAACAGCATAGATGCCAATTCACAAGTGACCAACAACTCTATTCACTGGCA
AGAGCAAGAACACGAGGACAAAGGCGCGAGGCTGAGGAAAGTCCACCGCATGGTCACAAAGAAACTTTTGCACATTGAGA
AAGTTGATAATTTGGGGGGTGGGTTGAAAAGCTTTTCTCATAGGTAGCTGTAGCCTGAAAAAATGGTCAGACAGCTGCAT
GCTTGGTTGTGCTACCGGGGGGAGCACCTGTAAATAGCTCAAACTTCAGAGAGGCTGGATGGGTTGTATTGGCGATTTGG
CGGTGTAATCTGCTCATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis