Browse Element(s) Details


Os.19374.1.S1_at

Description gb:AK062112.1
DB_XREF= gi:32972130
TID=Os.19374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485G01.28 (P0485G01.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B10, full insert sequence.
FL= gb:AK062112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4844010/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed
LOC_Os01g48470OsAffx.23713.1.S1_at11/111+28112546..28113059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19374.1.S1_at--33--3711Chr01:28085304..28085327 (24 bp)
CTAGTAACACATGGCAATTCCTTGA
LOC_Os01g48440
Os.19374.1.S1_at--603--1171Chr01:28085304..28085325 (22 bp)
AGTAACACATGGCAATTCCTTGAGT
LOC_Os01g48440
Os.19374.1.S1_at--453--7051Chr01:28085304..28085324 (21 bp)
GTAACACATGGCAATTCCTTGAGTC
LOC_Os01g48440
Os.19374.1.S1_at--488--2471Chr01:28085078..28085322 (25 bp)
AACACATGGCAATTCCTTGAGTCAA
LOC_Os01g48440
Os.19374.1.S1_at--379--2191Chr01:28085183..28085321 (25 bp)
ACACATGGCAATTCCTTGAGTCAAG
LOC_Os01g48440
Os.19374.1.S1_at--771--3311Chr01:28085182..28085320 (25 bp)
CACATGGCAATTCCTTGAGTCAAGA
LOC_Os01g48440
Os.19374.1.S1_at--1113--2111Chr01:28085181..28085319 (25 bp)
ACATGGCAATTCCTTGAGTCAAGAT
LOC_Os01g48440
Os.19374.1.S1_at--1057--3491Chr01:28085180..28085318 (25 bp)
CATGGCAATTCCTTGAGTCAAGATT
LOC_Os01g48440
Os.19374.1.S1_at--857--7711NONE
GGCAATTCCTTGAGTCAAGATTTAT
NONE
Os.19374.1.S1_at--75--2371Chr01:28084626..28084650 (25 bp)
AAACCATAGATTGTACACACAATGG
LOC_Os01g48440
Os.19374.1.S1_at--111--6611Chr01:28084618..28084642 (25 bp)
GATTGTACACACAATGGTGTGCTTG
LOC_Os01g48440
Target Sequence 
CTAGTAACACATGGCAATTCCTTGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGG
GATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGCA
GAGGAATCTGGATGCTGTTGTGCCAATAACATAACTGTCCTGCTGCTCCTCTTTTTGTTTGCCATCCTAGTGTGAATGAT
GCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTAA
CAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCAT
ATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCAC
AGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAGAGCAAAGCAGATACTCTCTTTGATATACATGAACAAAGGTTAAA
TCAAAACCATAGATTGTACACACAATGGTGTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis