Browse Element(s) Details


OsAffx.23713.1.S1_at

Description tigr:9629.m04667
TID=OsAffx.23713.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed
LOC_Os01g48470OsAffx.23713.1.S1_at11/111+28112546..28113059hypothetical protein
LOC_Os01g48480NANA1+28114773..28117974hypothetical protein
LOC_Os01g48490OsAffx.15723.1.S1_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490Os.45161.1.A1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.22699.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.7789.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48500Os.6981.1.S1_at11/111+28128261..28129260expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23713.1.S1_at--4--10431Chr01:28112576..28112600 (25 bp)
TTATCCAATGCTCCGACTCACTCGT
LOC_Os01g48470
OsAffx.23713.1.S1_at--1156--5691Chr01:28112590..28112614 (25 bp)
GACTCACTCGTCTCGTGGCAAGCCA
LOC_Os01g48470
OsAffx.23713.1.S1_at--367--7531Chr01:28112604..28112628 (25 bp)
GTGGCAAGCCAACCTCGTCTTTGAG
LOC_Os01g48470
OsAffx.23713.1.S1_at--17--3691Chr01:28112622..28112646 (25 bp)
CTTTGAGCCCACCATATTCGAGATA
LOC_Os01g48470
OsAffx.23713.1.S1_at--263--5371Chr01:28112804..28112828 (25 bp)
GAAGAGCTTAAACTGAACGAATACA
LOC_Os01g48470
OsAffx.23713.1.S1_at--627--271Chr01:28112902..28112922 (21 bp)
ATATGGGACATCTACGAGGCTGCAA
LOC_Os01g48470
OsAffx.23713.1.S1_at--127--9951Chr01:28112910..28112934 (25 bp)
TACGAGGCTGCAAAGGGCATCAATG
LOC_Os01g48470
OsAffx.23713.1.S1_at--645--6351Chr01:28112942..28112966 (25 bp)
GATGCCAGGGATTGTGGTGTACCTA
LOC_Os01g48470
OsAffx.23713.1.S1_at--1098--10831Chr01:28112953..28112977 (25 bp)
TTGTGGTGTACCTAGCGGTGCACGA
LOC_Os01g48470
OsAffx.23713.1.S1_at--1127--6971Chr01:28112960..28112984 (25 bp)
GTACCTAGCGGTGCACGATGAGTGT
LOC_Os01g48470
OsAffx.23713.1.S1_at--457--9131Chr01:28112992..28113016 (25 bp)
TGCGGCTGACCGGTGTTGACGTAAA
LOC_Os01g48470
Target Sequence 
TTATCCAATGCTCCGACTCACTCGTCTCGTGGCAAGCCAACCTCGTCTTTGAGCCCACCATATTCGAGATATNNNNNNNC
NNNNNCTCTTGAACATATTAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAGAGAGAGAGAGAGAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAGCTTAAA
CTGAACGAATACATATGGGACATCTACGAGGCTGCAAAGGGCATCAATGAGAAGTTGATGCCAGGGATTGTGGTGTACCT
AGCGGTGCACGATGAGTGTGTGCGGTTGCGGCTGACCGGTGTTGACGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis