Browse Element(s) Details


Os.6981.1.S1_at

Description gb:AK070436.1
DB_XREF= gi:32980460
TID=Os.6981.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1117_G01.16 (OJ1117_G01.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054M21, full insert sequence.
FL= gb:AK070436.1 gb:AK104204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed
LOC_Os01g48470OsAffx.23713.1.S1_at11/111+28112546..28113059hypothetical protein
LOC_Os01g48480NANA1+28114773..28117974hypothetical protein
LOC_Os01g48490OsAffx.15723.1.S1_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490Os.45161.1.A1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.22699.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.7789.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48500Os.6981.1.S1_at11/111+28128261..28129260expressed protein
LOC_Os01g48520NANA1+28146666..28148938retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6981.1.S1_at--997--5851Chr01:28128685..28128709 (25 bp)
GAGCCGCCGAACTACGAGATCGGGT
LOC_Os01g48500
Os.6981.1.S1_at--726--3531Chr01:28128756..28128780 (25 bp)
CATCGCGGACTTCATGGAGAAGCTG
LOC_Os01g48500
Os.6981.1.S1_at--364--4671Chr01:28129070..28129094 (25 bp)
GCGTGGTGCCCAACTGTAATTCTGA
LOC_Os01g48500
Os.6981.1.S1_at--714--7291Chr01:28129075..28129099 (25 bp)
GTGCCCAACTGTAATTCTGATTCCT
LOC_Os01g48500
Os.6981.1.S1_at--628--111Chr01:28129088..28129112 (25 bp)
ATTCTGATTCCTTCACTGATTTCTC
LOC_Os01g48500
Os.6981.1.S1_at--287--1971Chr01:28129102..28129126 (25 bp)
ACTGATTTCTCGCATAGCCACTATA
LOC_Os01g48500
Os.6981.1.S1_at--572--9991Chr01:28129116..28129140 (25 bp)
TAGCCACTATACACAGTTGCAACTG
LOC_Os01g48500
Os.6981.1.S1_at--62--6671Chr01:28129131..28129155 (25 bp)
GTTGCAACTGGTCATCAGGTTTTTC
LOC_Os01g48500
Os.6981.1.S1_at--518--9012Chr01:28129169..28129193 (25 bp)
TGAATTTTCAGTAGCATTTGCAATC
LOC_Os01g48500
Os.6981.1.S1_at--706--10711Chr01:28129186..28129210 (25 bp)
TTGCAATCAAACACTGAAACCATGT
LOC_Os01g48500
Os.6981.1.S1_at--315--7671Chr01:28129226..28129250 (25 bp)
GGGATAGCCAACTACGTGCACTTAT
LOC_Os01g48500
Target Sequence 
GAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAGCCCAAGGGGTGGNCNCATCGCGG
ACTTCATGGAGAAGCTGGAGGGGCTGATGGCGCGCNGGCGGTACGGGTCCGGGGAGCTGCTGGGCACAGNTGGCCGGCGT
GGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGACGGAGCTCT
TCCGCGTGCTCCGGCTGGTGGAGATGGACGTCGCGATGGTCAAGGCCGCCGTCAAGGAGGAGACCGTCAAGGAGCGCGTC
GAGATGGCGCGCGCGCGCTGCCGCCAGGCCATCCTCGTCGCGCTCNTCNGCNTGTGACGACGGACGCACCNGCGTGGTGC
CCAACTGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTG
TATGTATACCTGAATTTTCAGTAGCATTTGCAATCAAACACTGAAACCATGTATACGAGAAATGGATGGGATAGCCAACT
ACGTGCACTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis