Browse Element(s) Details


Os.32252.1.S1_at

Description gb:AK105493.1
DB_XREF= gi:32990702
TID=Os.32252.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1117_G01.12 (OJ1117_G01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C03, full insert sequence.
FL= gb:AK105493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4846011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed
LOC_Os01g48470OsAffx.23713.1.S1_at11/111+28112546..28113059hypothetical protein
LOC_Os01g48480NANA1+28114773..28117974hypothetical protein
LOC_Os01g48490OsAffx.15723.1.S1_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490Os.45161.1.A1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.22699.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.7789.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48500Os.6981.1.S1_at11/111+28128261..28129260expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009611biological_processresponse to wounding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32252.1.S1_at--602--5631Chr01:28108351..28108375 (25 bp)
GACACCAAAATACTCAGGGCGGCGA
LOC_Os01g48460
Os.32252.1.S1_at--589--491Chr01:28108223..28108247 (25 bp)
ATCGGACAGCGAGACGGCGGTACTT
LOC_Os01g48460
Os.32252.1.S1_at--1006--8951Chr01:28108199..28108223 (25 bp)
TGACAGGTCGCCGTCCATCGAAGAC
LOC_Os01g48460
Os.32252.1.S1_at--251--5791Chr01:28108177..28108201 (25 bp)
GACGAAACGGCGGACTCTTCAGAAA
LOC_Os01g48460
Os.32252.1.S1_at--503--10051Chr01:28108109..28108133 (25 bp)
TAGTTCGATCTGGAGCCCCGAGGGT
LOC_Os01g48460
Os.32252.1.S1_at--512--1391Chr01:28108096..28108120 (25 bp)
AGCCCCGAGGGTGCTAGCCTAGATT
LOC_Os01g48460
Os.32252.1.S1_at--993--1591Chr01:28108041..28108065 (25 bp)
AGCTGCTGTAGTTCTCATTTTGAGT
LOC_Os01g48460
Os.32252.1.S1_at--592--3571Chr01:28108026..28108050 (25 bp)
CATTTTGAGTTCTTAAGCCCTAGTA
LOC_Os01g48460
Os.32252.1.S1_at--824--1191Chr01:28108005..28108029 (25 bp)
AGTATAATGCCTACCCCAAATCATG
LOC_Os01g48460
Os.32252.1.S1_at--965--4631Chr01:28107981..28108005 (25 bp)
GCGTTACCCGCAAATTTCAGCATGA
LOC_Os01g48460
Os.32252.1.S1_at--985--10531Chr01:28107933..28107957 (25 bp)
TTCAGTATCAGTTGCACCGTATGGT
LOC_Os01g48460
Target Sequence 
GACACCAAAATACTCAGGGCGGCGAAGGAGGCGGCCGCGACTGGATGCAAGAGGAAGGCNGACGTGAAGAGCTCTGGTGC
AAGAAGGGGCAAGCGGCTCTGCTCCCGCTGCCGGGCGGAGACATCGGAATCGGACAGCGAGACGGCGGTACTTGACAGGT
CGCCGTCCATCGAAGACGAAACGGCGGACTCTTCAGAAATCCATGGAAGCAGTGATGGCAAATTCATCAGGTTCTTGTGA
TTTAGTTCGATCTGGAGCCCCGAGGGTGCTAGCCTAGATTGGAATCAGCGTGTACCAACAAAATGGATAGAGCTGCTGTA
GTTCTCATTTTGAGTTCTTAAGCCCTAGTATAATGCCTACCCCAAATCATGCGTTACCCGCAAATTTCAGCATGATACAG
ACAAGGTAAGCATTTATTTTCAGTATCAGTTGCACCGTATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis