Browse Element(s) Details


OsAffx.21508.1.S1_x_at

Description tigr:9629.m04661
TID=OsAffx.21508.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4843011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21508.1.S1_x_at--376--2651Chr01:28082049..28082073 (25 bp)
AAGAAGCGACGCACGGAGAAAGGCA
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--684--9031Chr01:28081985..28082009 (25 bp)
TGCAGAAGCCGCAGGGAACGACGCC
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--820--9111Chr01:28081769..28081793 (25 bp)
TGCTGCACCTGAGCGGCGCCATGAA
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--784--5071Chr01:28081718..28081742 (25 bp)
GCAGCCATGGCACCATCATCAAGGG
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--1161--7611Chr01:28081695..28081719 (25 bp)
GGGACCGGCTACATGGACTTCATCG
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--87--2111Chr01:28081685..28081709 (25 bp)
ACATGGACTTCATCGCCGGAACCGG
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--787--8151Chr01:28081668..28081692 (25 bp)
GGAACCGGCCTGAGGGAGCACGACG
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--296--1871Chr01:28081649..28081673 (25 bp)
ACGACGCCGTGCAGATCTGGGCCTT
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--289--1291Chr01:28081637..28081661 (25 bp)
AGATCTGGGCCTTCAAGCGCCGCGG
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--594--8031Chr01:28081585..28081609 (25 bp)
GGAGAGCCGCTTCTACCTGGTGATC
LOC_Os01g48430
OsAffx.21508.1.S1_x_at--628--9971Chr01:28081572..28081596 (25 bp)
TACCTGGTGATCGTCGGCGGTTCGT
LOC_Os01g48430
Target Sequence 
AAGAAGCGACGCACGGAGAAAGGCAGCGTCGTCATCGCCGCCACCGCCGCCGCCGACGGGGAGCTGCAGAAGCCGCAGGG
AACGACGCCGGAGACGAACGTGGAGGGAGAGGATCAGGCTCCTCCTCGCCCAAAGCCGGTGCCGAAGAAGAAGAAGCGAC
GAACGGAGAAAGGCAGCGTCGACGTCGCCGACGGTGAGCAGCAGCAGCAGCAGAAGGGGAGGGAGAAGGAGCCGAGGAAG
AAGGCGCAGGGGAAGGACCACGGCGGGGTGCCGGTGACGGTGCTGCACCTGAGCGGCGCCATGAAGGAGCTGCGGCTGGT
GCTCTGGGACAGCAGCCATGGCACCATCATCAAGGGGACCGGCTACATGGACTTCATCGCCGGAACCGGCCTGAGGGAGC
ACGACGCCGTGCAGATCTGGGCCTTCAAGCGCCGCGGGTTCCGCCTCTTCGGCGCCACCGTGCCGGAGAGCCGCTTCTAC
CTGGTGATCGTCGGCGGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21508.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis