Browse Element(s) Details


OsAffx.23711.1.S1_x_at

Description tigr:9629.m04645
TID=OsAffx.23711.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dof domain, zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4829011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23711.1.S1_x_at--695--5791Chr01:28003388..28003412 (25 bp)
GACGCCTCCGGGTTCAAGCTCTTCG
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--78--3771Chr01:28003393..28003417 (25 bp)
CTCCGGGTTCAAGCTCTTCGGGAAG
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--565--7891Chr01:28003398..28003422 (25 bp)
GGTTCAAGCTCTTCGGGAAGGTGAT
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--1025--1571Chr01:28003404..28003428 (25 bp)
AGCTCTTCGGGAAGGTGATCCAGCC
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--1077--8191Chr01:28003413..28003437 (25 bp)
GGAAGGTGATCCAGCCCGACGGACA
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--876--5271Chr01:28003414..28003438 (25 bp)
GAAGGTGATCCAGCCCGACGGACAG
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--274--5051Chr01:28003537..28003561 (25 bp)
GCAGACTCTGCAGGCGGCGGGCGGT
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--844--4191Chr01:28003606..28003630 (25 bp)
CCCGCGGTGCGGGAGCAGGGAGACC
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--550--9131Chr01:28003613..28003637 (25 bp)
TGCGGGAGCAGGGAGACCAAGTTCT
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--188--10511Chr01:28003643..28003667 (25 bp)
TTCAACAACTACAACGTGCGGCAGC
LOC_Os01g48290
OsAffx.23711.1.S1_x_at--1103--2191Chr01:28003647..28003671 (25 bp)
ACAACTACAACGTGCGGCAGCCGCG
LOC_Os01g48290
Target Sequence 
GACGCCTCCGGGTTCAAGCTCTTCGGGAAGGTGATCCAGCCCGACGGACAGCGGGGCGTGGAAGAGAGCGCGGCGGCGCA
GGCGCCACCTCATCCGCATCCGCCTGCGCCGCCGGTGATGGAGGCGGCGGCGGCGGCGGCGGGGACGTCGCAGACTCTGC
AGGCGGCGGGCGGTGGCGGTGGCGGAGGAGGGGGAGGAGGGGGAGAGCCGCTGCCGTGCCCGCGGTGCGGGAGCAGGGAG
ACCAAGTTCTGCTACTTCAACAACTACAACGTGCGGCAGCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis