Browse Element(s) Details


OsAffx.15399.1.S1_at

Description tigr:9634.m01280
TID=OsAffx.15399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1291011/11XPA-binding protein 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12870Os.27436.1.A1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12870Os.27436.2.S1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12876Os.24311.1.A1_at9/116+7046261..7051935expressed protein
LOC_Os06g12882Os.49387.1.S1_at11/116+7052690..7055205Zinc finger protein 291, putative, expressed
LOC_Os06g12890NANA6+7058670..7059523hypothetical protein
LOC_Os06g12900Os.35344.18.S1_x_at10/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12900Os.35344.3.S1_x_at9/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12900OsAffx.22940.5.S1_x_at3/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12910OsAffx.15399.1.S1_at11/116+7066118..7068523XPA-binding protein 2, putative
LOC_Os06g12920NANA6+7071754..7072192hypothetical protein
LOC_Os06g12930NANA6+7075783..7077025hypothetical protein
LOC_Os06g12940OsAffx.27615.1.S1_at11/116+7078678..7081436hypothetical protein
LOC_Os06g12940OsAffx.11516.1.S1_x_at1/116+7078678..7081436hypothetical protein
LOC_Os06g12950OsAffx.15400.1.S1_at11/116+7084091..7087529expressed protein
LOC_Os06g12960Os.50155.1.S1_at11/116+7092926..7095195expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15399.1.S1_at--254--9331Chr06:7066662..7066686 (25 bp)
TCGCCAAGCGTGTCCTGAAGGTGTA
LOC_Os06g12910
OsAffx.15399.1.S1_at--934--9931Chr06:7066591..7066615 (25 bp)
TACGAGGCGTACGTCGCACGGGCCA
LOC_Os06g12910
OsAffx.15399.1.S1_at--802--4131Chr06:7066563..7066587 (25 bp)
CGCTGTTCGGCGTACTCAAGGCGAG
LOC_Os06g12910
OsAffx.15399.1.S1_at--906--6131Chr06:7066541..7066565 (25 bp)
GAGGGAGATATACCACCAGGCCATC
LOC_Os06g12910
OsAffx.15399.1.S1_at--484--5831Chr06:7066459..7066483 (25 bp)
GACCTCGAGATTGGCCTCGGCGAAG
LOC_Os06g12910
OsAffx.15399.1.S1_at--796--7331Chr06:7066428..7066452 (25 bp)
GTGCACGGGCGCTGTACGTCTACGC
LOC_Os06g12910
OsAffx.15399.1.S1_at--567--5451Chr06:7066355..7066379 (25 bp)
GAACGACTTCGAGGTGCGTCACGGC
LOC_Os06g12910
OsAffx.15399.1.S1_at--331--631Chr06:7066309..7066333 (25 bp)
ATGCTCCGCGTCAAGAGAACCGTGG
LOC_Os06g12910
OsAffx.15399.1.S1_at--405--4111Chr06:7066188..7066212 (25 bp)
CGAAGAGGCCTCTGCTTGCGTGTGC
LOC_Os06g12910
OsAffx.15399.1.S1_at--860--8691Chr06:7066168..7066192 (25 bp)
TGTGCCGCTCAGCAAGCCGATCATG
LOC_Os06g12910
OsAffx.15399.1.S1_at--629--9611Chr06:7066148..7066172 (25 bp)
TCATGCCAGCGGCTTCGACGAGGAA
LOC_Os06g12910
Target Sequence 
TCGCCAAGCGTGTCCTGAAGGTGTACGAGGAGGCCGCGGCCGCCGTCCCCGGCGGCGACAAGCTCGCCGTCTACGAGGCG
TACGTCGCACGGGCCACCGCGCTGTTCGGCGTACTCAAGGCGAGGGAGATATACCACCAGGCCATCCTCCACGGCGGCGG
CCTCCCGGACGCGGACGCCAGGGTGCTCTGCCTCCAGTTCGCCGACCTCGAGATTGGCCTCGGCGAAGCCCACCGTGCAC
GGGCGCTGTACGTCTACGCCTCCGGCTTCACCGACCCGACGGCTCACCCCGACTTCTGGAGGCGGTGGAACGACTTCGAG
GTGCGTCACGGCGACGAGTGCACGTTCCGGGAGATGCTCCGCGTCAAGAGAACCGTGGCGGCCGCCAACGCCGGAGCCGG
CGCCGTGGCGCAGCTGGCCGAGCAGGTCCTCGCCGACGACGCCATGGAACAGATGGACGCGGCGGTGGCGGCGCCGAAGA
GGCCTCTGCTTGCGTGTGCCGCTCAGCAAGCCGATCATGCCAGCGGCTTCGACGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis