Browse Element(s) Details


Os.4079.2.S1_a_at

Description gb:AK063083.1
DB_XREF= gi:32973101
TID=Os.4079.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4079 (NCBI UniGene Cluster)
UG_TITLE=Putative Rop family GTPase ROP4 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A05, full insert sequence.
FL= gb:AK067253.1 gb:AK063083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1279011/11RAC-like GTP binding protein ARAC10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12769NANA6+6968787..6969403NA
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed
LOC_Os06g12790Os.4079.1.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12790Os.4079.2.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12800OsAffx.27591.1.S1_x_at11/116+6994344..6995672expressed protein
LOC_Os06g12800OsAffx.27591.1.S1_at11/116+6994344..6995672expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000902biological_processcellular morphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0030833biological_processregulation of actin filament polymerization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0040007biological_processgrowth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4079.2.S1_a_at--189--1951Chr06:6990573..6990594 (22 bp)
ACTGATTACGTACCCACTGTTTTTG
LOC_Os06g12790
Os.4079.2.S1_a_at--411--6992Chr06:6990579..6990603 (25 bp)
GTACCCACTGTTTTTGACAATTTCA
LOC_Os06g12790
Os.4079.2.S1_a_at--164--8251Chr06:6990624..6990648 (25 bp)
GGCACCACGGTGAATTTGGGTCTCT
LOC_Os06g12790
Os.4079.2.S1_a_at--483--5111Chr06:6990635..6990659 (25 bp)
GAATTTGGGTCTCTGGGATACTGCA
LOC_Os06g12790
Os.4079.2.S1_a_at--1095--6551Chr06:6990798..6990822 (25 bp)
GATTACAACAGATTGAGGCCGCTAA
LOC_Os06g12790
Os.4079.2.S1_a_at--705--6591Chr06:6990808..6990832 (25 bp)
GATTGAGGCCGCTAAGCTACCGTGG
LOC_Os06g12790
Os.4079.2.S1_a_at--442--7551Chr06:6990829..6990853 (25 bp)
GTGGCGCCGATGTCTTTGTGCTTGC
LOC_Os06g12790
Os.4079.2.S1_a_at--164--4231Chr06:6990869..6990893 (25 bp)
CCGAGCTAGCTATGAGAATGTCATG
LOC_Os06g12790
Os.4079.2.S1_a_at--915--2851Chr06:6991010..6991034 (25 bp)
AAGTGGTTACCAGAGCTTCAGCATT
LOC_Os06g12790
Os.4079.2.S1_a_at--423--1371Chr06:6991021..6991045 (25 bp)
AGAGCTTCAGCATTATGCACCAGGG
LOC_Os06g12790
Os.4079.2.S1_a_at--264--7271Chr06:6991046..6991070 (25 bp)
GTGCCAATTGTGTTGGTTGGGACCA
LOC_Os06g12790
Target Sequence 
ACTGATTACGTACCCACTGTTTTTGACAATTTCAGTGCAAACGTGGTNGGTCGACGGCACCACGGTGAATTTGGGTCTCT
GGGATACTGCAGGGCAGGAAGATTACAACAGATTGAGGCCGCTAAGCTACCGTGGCGCCGATGTCTTTGTGCTTGCCTTC
TCCCTAGTGAGCCGAGCTAGCTATGAGAATGTCATGAAGAAGGTTCAGAAAAAAAAAATCTCTTGCAATTAATCTGTTAA
ACCCATAATGTGGATGCATTCAGAGAGATTCAGTATTTCAGTTAGGTTTACCTTGTGCTTTTTGTCCCCTTGAAGTGGTT
ACCAGAGCTTCAGCATTATGCACCAGGGGTGCCAATTGTGTTGGTTGGGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4079.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis