Browse Element(s) Details


OsAffx.17708.1.S1_at

Description tigr:9637.m01233
TID=OsAffx.17708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1511011/11hypothetical protein
LOC_Os10g281402/11retrotransposon protein, putative, unclassified
LOC_Os01g334401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15090NANA9+9145532..9150235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15100NANA9+9151782..9153213retrotransposon protein, putative, unclassified
LOC_Os09g15110OsAffx.17708.1.S1_at11/119+9156289..9157671hypothetical protein
LOC_Os09g15120OsAffx.22368.1.S1_x_at1/119+9175901..9178868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15120OsAffx.1646.1.S1_x_at1/119+9175901..9178868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15130OsAffx.22722.1.S1_at2/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15130OsAffx.22722.1.S1_x_at1/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15140OsAffx.20628.1.S1_at5/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.10496.1.S1_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.15396.1.S1_x_at1/119+9182378..9185302retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17708.1.S1_at--874--2351Chr09:9156340..9156364 (25 bp)
AAAGCTGTTAAGGATAAACTCAGGG
LOC_Os09g15110
OsAffx.17708.1.S1_at--208--9792Chr09:9156354..9156378 (25 bp)
TAAACTCAGGGTGAATTTAGGTCTT
LOC_Os09g15110
OsAffx.17708.1.S1_at--512--1033Chr09:9156372..9156396 (25 bp)
AGGTCTTTTTCTTTGTGCTAGTCTT
LOC_Os09g15110
OsAffx.17708.1.S1_at--842--10312Chr09:9156379..9156403 (25 bp)
TTTCTTTGTGCTAGTCTTTGCTGGG
LOC_Os09g15110
OsAffx.17708.1.S1_at--71--3571Chr09:9156493..9156517 (25 bp)
CATAGGTGGAAGGTGCTGCTGCCAA
LOC_Os09g15110
OsAffx.17708.1.S1_at--1079--2671Chr09:9156556..9156580 (25 bp)
AAGCTGAAGGCTAAGATCGACTCTC
LOC_Os09g15110
OsAffx.17708.1.S1_at--470--1291Chr09:9156569..9156593 (25 bp)
AGATCGACTCTCTTCATCCAATGAA
LOC_Os09g15110
OsAffx.17708.1.S1_at--417--10531Chr09:9156581..9156605 (25 bp)
TTCATCCAATGAACGTGCTACCATA
LOC_Os09g15110
OsAffx.17708.1.S1_at--991--5451Chr09:9156591..9156615 (25 bp)
GAACGTGCTACCATACAATATTAGT
LOC_Os09g15110
OsAffx.17708.1.S1_at--656--7432Chr09:9156614..9156638 (25 bp)
GTGTTTCAGTGTTGTTGCTCTTGGG
LOC_Os09g15110
OsAffx.17708.1.S1_at--939--6611Chr09:9156639..9156663 (25 bp)
GTTGAGGTCTCTTAGTCGTTTGGAT
LOC_Os09g15110
Target Sequence 
AAAGCTGTTAAGGATAAACTCAGGGTGAATTTAGGTCTTTTTCTTTGTGCTAGTCTTTGCTGGGGTTTGTGGTTGGTAGT
GTACAAGGCAATTTCTTTGATGCATAGGTGGAAGGTGCTGCTGCCAAAAGAAAGAGATCGCGAAGCTTTGAACATGCTGC
TTGAGAAGCTGAAGGCTAAGATCGACTCTCTTCATCCAATGAACGTGCTACCATACAATATTAGTGTTTCAGTGTTGTTG
CTCTTGGGGTTGAGGTCTCTTAGTCGTTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis