Browse Element(s) Details


OsAffx.19405.1.S1_at

Description tigr:9639.m04333
TID=OsAffx.19405.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g118809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11840OsAffx.31512.1.S1_x_at10/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.24317.5.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.27015.2.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11850OsAffx.24317.3.S1_at11/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11850OsAffx.24317.5.S1_x_at6/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein
LOC_Os09g11900Os.43203.1.S1_x_at10/119+6686847..6690306expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19405.1.S1_at--1030--431NONE
ATCTTCTCAACCTGTCATGCAGATA
NONE
OsAffx.19405.1.S1_at--137--3871NONE
CTGTCATGCAGATAGCCAAGGTCTT
NONE
OsAffx.19405.1.S1_at--823--3431Chr09:6665414..6665438 (25 bp)
CAGATAGCCAAGGTCTTGCCAGTGC
LOC_Os09g11880
OsAffx.19405.1.S1_at--344--4351Chr09:6665432..6665456 (25 bp)
CCAGTGCTAAAGTCAGTGGCTCTGA
LOC_Os09g11880
OsAffx.19405.1.S1_at--820--7531Chr09:6665447..6665471 (25 bp)
GTGGCTCTGATAAAGATGATATTAA
LOC_Os09g11880
OsAffx.19405.1.S1_at--38--8371Chr09:6665518..6665542 (25 bp)
GGCGGTGGCAGACTCGCTGGCCATG
LOC_Os09g11880
OsAffx.19405.1.S1_at--944--3951Chr09:6665556..6665580 (25 bp)
CGGTATCCCTGGTGGTGGTCAAAGT
LOC_Os09g11880
OsAffx.19405.1.S1_at--772--1091Chr09:6665578..6665602 (25 bp)
AGTGGTGGTATTGGTGCCCCTGGTG
LOC_Os09g11880
OsAffx.19405.1.S1_at--988--8551Chr09:6665700..6665724 (25 bp)
TGGAGGCCTCTCTGGACGCGGCCAT
LOC_Os09g11880
OsAffx.19405.1.S1_at--1146--7491Chr09:6665750..6665774 (25 bp)
GTGGAGGTGGCCGTAGATCTCTACC
LOC_Os09g11880
OsAffx.19405.1.S1_at--1112--1271Chr09:6665764..6665788 (25 bp)
AGATCTCTACCTGGCCATGGGCATG
LOC_Os09g11880
Target Sequence 
ATCTTCTCAACCTGTCATGCAGATAGCCAAGGTCTTGCCAGTGCTAAAGTCAGTGGCTCTGATAAAGATGATATTAACAT
TATTGGTAGAGGTGGAGGCCACGACCGCGGGGGTCATGGTGGTGGCGGTGGCAGACTCGCTGGCCATGGTCACGGTGGTG
GCGGTATCCCTGGTGGTGGTCAAAGTGGTGGTATTGGTGCCCCTGGTGGTGGGTGCGGAGGGGCTGGCCATGGTGGAGGC
AGTGCTGGGGGCGGTCGTGGTGGTGGAGCAGGAGGCAGCCATCGTGGAGGTGGTGGCGGCCGTGGTGGAGGCCTCTCTGG
ACGCGGCCATGGCAGCGGTGGTGCTGGGGGTAGTAGTGGAGGTGGCCGTAGATCTCTACCTGGCCATGGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis