Browse Element(s) Details


OsAffx.24317.3.S1_at

Description tigr:9639.m04336
TID=OsAffx.24317.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1185011/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g232606/11transposon protein, putative, unclassified
LOC_Os08g252505/11hypothetical protein
LOC_Os08g037505/11hypothetical protein
LOC_Os04g251204/11hypothetical protein
LOC_Os06g390902/11transposon protein, putative, unclassified
LOC_Os02g296102/11hypothetical protein
LOC_Os05g258001/11hAT family dimerisation domain containing protein
LOC_Os05g257901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11830OsAffx.19407.1.S1_at11/119+6630460..6632006hypothetical protein
LOC_Os09g11840OsAffx.31512.1.S1_x_at10/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.24317.5.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.27015.2.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11850OsAffx.24317.3.S1_at11/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11850OsAffx.24317.5.S1_x_at6/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003723molecular_functionRNA binding
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24317.3.S1_at--571--9755Chr05:14937570..14937676 (25 bp)
TAAGGCGTGTGCTGCTAGCTATCGA
LOC_Os05g25790
OsAffx.24317.3.S1_at--1023--5234Chr09:13805230..13805254 (25 bp)
GAATCAGCACCCACAGTTAAAACAC
LOC_Os09g23260
OsAffx.24317.3.S1_at--214--6775Chr09:13805245..13805269 (25 bp)
GTTAAAACACGATTGGCCTGATTTC
LOC_Os09g23260
OsAffx.24317.3.S1_at--892--8416Chr09:13805259..13805283 (25 bp)
GGCCTGATTTCAATATTACCGAATG
LOC_Os09g23260
OsAffx.24317.3.S1_at--72--9955Chr09:13805275..13805299 (25 bp)
TACCGAATGGGAGTACAACAAAGTC
LOC_Os09g23260
OsAffx.24317.3.S1_at--4--1411Chr09:6642327..6642433 (25 bp)
AGACGGCGTCTCATGCGGCCTGTAC
LOC_Os09g11850
OsAffx.24317.3.S1_at--319--84310Chr09:13805418..13805442 (25 bp)
GGCCTGTACACCCTTAAGTTCATGG
LOC_Os09g23260
OsAffx.24317.3.S1_at--655--10532Chr09:13805436..13805460 (25 bp)
TTCATGGAGCATTGGACTGGATCTT
LOC_Os09g23260
OsAffx.24317.3.S1_at--16--4951Chr09:6642285..6642309 (25 bp)
GCATTGGACTGGATCTTATCTCCTA
LOC_Os09g11850
OsAffx.24317.3.S1_at--486--10411Chr09:6642270..6642294 (25 bp)
TTATCTCCTAAAAATTCAACTACAG
LOC_Os09g11850
OsAffx.24317.3.S1_at--78--7973Chr09:13805673..13805697 (25 bp)
GGATCATCTGTCATACATTTACCAC
NONE
Target Sequence 
TAAGGCGTGTGCTGCTAGCTATCGAGAGGGGATTATACGGGACAGAGAATCAGCACCCACAGTTAAAACACGATTGGCCT
GATTTCAATATTACCGAATGGGAGTACAACAAAGTCCAAAAATTGCCAAAGCAAGGAGACGGCGTCTCATGCGGCCTGTA
CACCCTTAAGTTCATGGAGCATTGGACTGGATCTTATCTCCTAAAAATTCAACTACAGAAGGAAGTAAAAACATTTCGAC
AGGACTTAGCCGGAATTTTGATCAACTCCGAACTGAACAACATTAAAGATCGTCCACTGCTACCAACCACGACATATATG
GATCATCTGTCATACATTTACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24317.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis