Browse Element(s) Details


OsAffx.19407.1.S1_at

Description tigr:9637.m00910
TID=OsAffx.19407.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1183011/11hypothetical protein
LOC_Os01g231302/11transposon protein, putative, Mutator sub-class
LOC_Os06g181102/11transposon protein, putative, Mutator sub-class
LOC_Os01g269301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11810NANA9+6608276..6609132expressed protein
LOC_Os09g11820Os.14919.1.S1_at2/119+6610010..6615959SWIM zinc finger family protein
LOC_Os09g11820OsAffx.29313.1.S1_at1/119+6610010..6615959SWIM zinc finger family protein
LOC_Os09g11820Os.56216.1.S1_at1/119+6610010..6615959SWIM zinc finger family protein
LOC_Os09g11830OsAffx.19407.1.S1_at11/119+6630460..6632006hypothetical protein
LOC_Os09g11840OsAffx.31512.1.S1_x_at10/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.24317.5.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11840OsAffx.27015.2.S1_x_at1/119+6638203..6640170hypothetical protein
LOC_Os09g11850OsAffx.24317.3.S1_at11/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11850OsAffx.24317.5.S1_x_at6/119+6642023..6645354Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19407.1.S1_at--68--7551Chr09:6631844..6631868 (25 bp)
GTGGCGCTCCCAAGCGACAGCGATG
LOC_Os09g11830
OsAffx.19407.1.S1_at--138--8491Chr09:6631756..6631780 (25 bp)
TGGCGGCCCTCAATGCCGATGTGGC
LOC_Os09g11830
OsAffx.19407.1.S1_at--765--4691Chr09:6631361..6631670 (25 bp)
GCGGCAAGGAGCTCTATGGCCATTG
LOC_Os09g11830
OsAffx.19407.1.S1_at--694--8432Chr06:10546751..10546775 (25 bp)
GGCCATTGTGCCACTACAACAAGTT
LOC_Os06g18110
OsAffx.19407.1.S1_at--994--2451Chr09:6631327..6631351 (25 bp)
AACAAGTTGTTGCACCTGTTGCCAA
LOC_Os09g11830
OsAffx.19407.1.S1_at--858--1331Chr09:6631204..6631228 (25 bp)
AGAGAAAACCATCCCCAATAGTACA
LOC_Os09g11830
OsAffx.19407.1.S1_at--373--291Chr09:6631187..6631211 (25 bp)
ATAGTACAAGCTACTACTCCACCTG
LOC_Os09g11830
OsAffx.19407.1.S1_at--79--9913Chr09:6631176..6631200 (25 bp)
TACTACTCCACCTGCCAAAAGGAGG
LOC_Os09g11830
OsAffx.19407.1.S1_at--1087--651Chr09:6631144..6631168 (25 bp)
ATGAAATACCACATGACAATCCAGC
LOC_Os09g11830
OsAffx.19407.1.S1_at--121--5613Chr06:10546979..10546998 (20 bp)
GACAATCCAGCAATGAGAACTAGAA
LOC_Os06g18110
OsAffx.19407.1.S1_at--130--5171Chr09:6631105..6631129 (25 bp)
GCAAGCAGAGTAGTCCATCAATGGG
LOC_Os09g11830
Target Sequence 
GTGGCGCTCCCAAGCGACAGCGATGCAGCGCTCCCAGGCGGCGGCGCGGGGGCCCCCGGCAGCGGTGCGCGGCACCCAGG
CAGCGGCGTGGCGGCCCTCAATGCCGATGTGGCGACACCAGGCGGTGGCGTGGCGGCCCAGGCGGTGGCGCGTGGCTCGC
ACGCGGCGGCGCGTCGGCAGCGAGCTCTCAGGCGACGGGCGGCAAGGAGCTCTATGGCCATTGTGCCACTACAACAAGTT
GTTGCACCTGTTGCCAAGGGGAAGGGGAAGGGGAAGGAGAAGAAGGGGAAGTGGAAGGGGAAGGGGAAGGGGAAGGGGAA
GAAGGATGAGAAGGAGGACAAAGACAAGAAGATCAAGAGAAAACCATCCCCAATAGTACAAGCTACTACTCCACCTGCCA
AAAGGAGGAAGAATAATGAAATACCACATGACAATCCAGCAATGAGAACTAGAAGCAAGCAGAGTAGTCCATCAATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis