Browse Element(s) Details


OsAffx.24317.5.S1_x_at

Description tigr:9634.m03733
TID=OsAffx.24317.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3909011/11transposon protein, putative, unclassified
LOC_Os04g251206/11hypothetical protein
LOC_Os09g118506/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g232604/11transposon protein, putative, unclassified
LOC_Os08g252504/11hypothetical protein
LOC_Os08g037504/11hypothetical protein
LOC_Os05g257903/11transposon protein, putative, unclassified
LOC_Os02g296103/11hypothetical protein
LOC_Os03g429302/11hypothetical protein
LOC_Os06g202502/11retrotransposon, putative, centromere-specific
LOC_Os09g118401/11hypothetical protein
LOC_Os05g258001/11hAT family dimerisation domain containing protein
LOC_Os02g190301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39040OsAffx.28001.1.S1_s_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040OsAffx.28001.1.S1_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39050Os.54909.1.S1_at11/116+23184075..23185284Syntaxin 125, putative, expressed
LOC_Os06g39060Os.4941.1.S1_at10/116+23186197..23187970Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os06g39070NANA6+23195393..23196850UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os06g39080NANA6+23203563..23205056UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090OsAffx.24317.5.S1_x_at11/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.5.S1_at10/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.3.S1_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.55262.1.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.6.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.27015.2.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.31512.1.S1_x_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.49703.1.S1_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39100OsAffx.28002.1.S1_at11/116+23216726..23216998hypothetical protein
LOC_Os06g39110Os.8503.1.S1_at11/116+23226138..23227392expressed protein
LOC_Os06g39120Os.37051.1.S1_at11/116+23231538..23232572expressed protein
LOC_Os06g39130NANA6+23236937..23237373hypothetical protein
LOC_Os06g39140Os.12297.1.S1_at10/116+23240330..23242269protozoan/cyanobacterial globin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003723molecular_functionRNA binding
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24317.5.S1_x_at--934--8554Chr05:14937191..14937214 (24 bp)
TGGATGCATACATCCAATGCCTCCG
LOC_Os05g25790
OsAffx.24317.5.S1_x_at--889--6237Chr09:13804772..13804796 (25 bp)
GATGGCAAGGCCTTCCTAGAGATGG
LOC_Os09g23260
OsAffx.24317.5.S1_x_at--872--4437Chr09:13804781..13804805 (25 bp)
GCCTTCCTAGAGATGGCCATTAAAA
LOC_Os09g23260
OsAffx.24317.5.S1_x_at--374--4959Chr05:14937364..14937462 (25 bp)
GCATTTGACATGATTTTCCTCCCAA
LOC_Os05g25790
OsAffx.24317.5.S1_x_at--312--5678Chr09:13804901..13804999 (25 bp)
GACATGATTTTCCTCCCAATTAATA
LOC_Os09g23260
OsAffx.24317.5.S1_x_at--852--9851Chr06:23207212..23207236 (25 bp)
TACACACTGGTACCTAGCCGTTATT
LOC_Os06g39090
OsAffx.24317.5.S1_x_at--463--9816Chr09:13805031..13805051 (21 bp)
TAACGCCAAGCGACGTGAGGTCGAT
LOC_Os09g23260
OsAffx.24317.5.S1_x_at--916--2671Chr06:23205866..23205890 (25 bp)
AAGCGACGCGGTGAAGAGGCCTCAT
LOC_Os06g39090
OsAffx.24317.5.S1_x_at--947--1311Chr06:23205852..23205876 (25 bp)
AGAGGCCTCATCGAGAGCCGGCTGA
LOC_Os06g39090
OsAffx.24317.5.S1_x_at--318--1091Chr06:23205709..23205733 (25 bp)
AGGGCGACGAGTAATGGGCTTCGAC
LOC_Os06g39090
OsAffx.24317.5.S1_x_at--427--3616Chr09:13807430..13807454 (25 bp)
CTTCGACGGAGGGAAGCCGCCGATA
NONE
Target Sequence 
TGGATGCATACATCCAATGCCTCCGCTATAAAGTGAAAGGAATCAGGGGAGATGGCAAGGCCTTCCTAGAGATGGCCATT
AAAATAAGTCTACTAAATGTAGAGGGAGTGCATGTCGAAGCAAGCAAACCTCGAAATAAACGATGGATTAGAGATATGGC
ACGCGGCTATCTAGCATTTGACATGATTTTCCTCCCAATTAATATTAAAGATACACACTGGTACCTAGCCGTTATTAACG
CCAAGCGACGTGAGGTCGATGGCGACAGCGGTGGAGTGAAGGGGGCGGCGGTCCATGGGGAGGAGAACGTGGCGGCGGTG
GCGGGGGGAAGCGACGCGGTGAAGAGGCCTCATCGAGAGCCGGCTGAGGCGGGTGGAGGGGCGGCGACGCGACGCGACTC
GCTGGAGAAGGGGGCGGGGGAGGAGGACGGCGACGGTGGGGGCTCACAAGCCGGCGCGGAGACGCCGCCAGAGGAGAAGG
CGGCGAGGGCGACGAGTAATGGGCTTCGACGGAGGGAAGCCGCCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24317.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis