Browse Element(s) Details


Os.54909.1.S1_at

Description gb:AK107080.1
DB_XREF= gi:32992289
TID=Os.54909.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F10, full insert sequence.
FL= gb:AK107080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3905011/11Syntaxin 125, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39020NANA6+23164710..23169275retrotransposon protein, putative, unclassified
LOC_Os06g39030OsAffx.28000.1.A1_at11/116+23171472..23172146hypothetical protein
LOC_Os06g39040OsAffx.28001.1.S1_s_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040OsAffx.28001.1.S1_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39050Os.54909.1.S1_at11/116+23184075..23185284Syntaxin 125, putative, expressed
LOC_Os06g39060Os.4941.1.S1_at10/116+23186197..23187970Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os06g39070NANA6+23195393..23196850UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os06g39080NANA6+23203563..23205056UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090OsAffx.24317.5.S1_x_at11/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.5.S1_at10/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.3.S1_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.55262.1.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.6.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.27015.2.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.31512.1.S1_x_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.49703.1.S1_at1/116+23205641..23215431transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005886cellular_componentplasma membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54909.1.S1_at--509--6191Chr06:23184772..23184796 (25 bp)
GAGGACAGCACGATCGATTCGCTCA
LOC_Os06g39050
Os.54909.1.S1_at--977--1871Chr06:23184781..23184805 (25 bp)
ACGATCGATTCGCTCATCGAGTCGG
LOC_Os06g39050
Os.54909.1.S1_at--237--8271Chr06:23184854..23184878 (25 bp)
GGCAGGTGATGGACACCATCTCGGA
LOC_Os06g39050
Os.54909.1.S1_at--395--831Chr06:23184862..23184886 (25 bp)
ATGGACACCATCTCGGAGATCCAGG
LOC_Os06g39050
Os.54909.1.S1_at--1065--3211Chr06:23185083..23185107 (25 bp)
CAAGTGGGCGTGTGTCGCCGTCCTC
LOC_Os06g39050
Os.54909.1.S1_at--1095--7311Chr06:23185144..23185168 (25 bp)
GTGCTCATCAACCTCCGCATCTTGA
LOC_Os06g39050
Os.54909.1.S1_at--1021--9291Chr06:23185157..23185181 (25 bp)
TCCGCATCTTGACGCTCAGATGATT
LOC_Os06g39050
Os.54909.1.S1_at--339--3631Chr06:23185164..23185188 (25 bp)
CTTGACGCTCAGATGATTCATTCAT
LOC_Os06g39050
Os.54909.1.S1_at--346--6571Chr06:23185178..23185202 (25 bp)
GATTCATTCATCATTTCCTCCCTAG
LOC_Os06g39050
Os.54909.1.S1_at--798--9311Chr06:23185196..23185220 (25 bp)
TCCCTAGCTAACCTGCTAACTCAGA
LOC_Os06g39050
Os.54909.1.S1_at--554--3831Chr06:23185208..23185232 (25 bp)
CTGCTAACTCAGATGTGTCAAATTA
LOC_Os06g39050
Target Sequence 
GAGGACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCGATCCAGGAGCAAGGGCG
GGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCACGACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACC
TGCACCAGGTGTTCCTCGACATGGCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCG
CACGCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAGAGCAGCCGCAAGTGGGC
GTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTCATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGC
TCAGATGATTCATTCATCATTTCCTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis