Browse Element(s) Details

OsAffx.28001.1.S1_at

Description

tigr:9634.m03728
TID=OsAffx.28001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39040	11/11	NAD dependent epimerase/dehydratase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39000	OsAffx.15829.1.S1_at	11/11	6	+	23155212..23155634	hypothetical protein
LOC_Os06g39010	OsAffx.15830.1.S1_at	11/11	6	+	23156564..23157463	hypothetical protein
LOC_Os06g39020	NA	NA	6	+	23164710..23169275	retrotransposon protein, putative, unclassified
LOC_Os06g39030	OsAffx.28000.1.A1_at	11/11	6	+	23171472..23172146	hypothetical protein
LOC_Os06g39040	OsAffx.28001.1.S1_s_at	11/11	6	+	23180262..23183502	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040	OsAffx.28001.1.S1_at	11/11	6	+	23180262..23183502	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39050	Os.54909.1.S1_at	11/11	6	+	23184075..23185284	Syntaxin 125, putative, expressed
LOC_Os06g39060	Os.4941.1.S1_at	10/11	6	+	23186197..23187970	Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os06g39070	NA	NA	6	+	23195393..23196850	UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os06g39080	NA	NA	6	+	23203563..23205056	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090	OsAffx.24317.5.S1_x_at	11/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.24317.5.S1_at	10/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.24317.3.S1_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	Os.55262.1.S1_x_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.24317.6.S1_x_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.27015.2.S1_x_at	2/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	OsAffx.31512.1.S1_x_at	1/11	6	+	23205641..23215431	transposon protein, putative, unclassified
LOC_Os06g39090	Os.49703.1.S1_at	1/11	6	+	23205641..23215431	transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28001.1.S1_at--167--793	1	Chr06:23181884..23181908 (25 bp)	GGTTGGAGCTCAATTTCGCTGTGAA	LOC_Os06g39040
OsAffx.28001.1.S1_at--22--855	1	Chr06:23181887..23181911 (25 bp)	TGGAGCTCAATTTCGCTGTGAATGT	LOC_Os06g39040
OsAffx.28001.1.S1_at--797--807	1	Chr06:23181888..23181912 (25 bp)	GGAGCTCAATTTCGCTGTGAATGTA	LOC_Os06g39040
OsAffx.28001.1.S1_at--718--483	1	Chr06:23181891..23181915 (25 bp)	GCTCAATTTCGCTGTGAATGTAGCA	LOC_Os06g39040
OsAffx.28001.1.S1_at--38--21	1	Chr06:23181896..23181920 (25 bp)	ATTTCGCTGTGAATGTAGCAGCAAC	LOC_Os06g39040
OsAffx.28001.1.S1_at--709--735	1	Chr06:23181904..23181928 (25 bp)	GTGAATGTAGCAGCAACATACACTT	LOC_Os06g39040
OsAffx.28001.1.S1_at--862--695	1	Chr06:23181910..23181934 (25 bp)	GTAGCAGCAACATACACTTTAACAG	LOC_Os06g39040
OsAffx.28001.1.S1_at--38--153	1	Chr06:23181912..23181936 (25 bp)	AGCAGCAACATACACTTTAACAGAG	LOC_Os06g39040
OsAffx.28001.1.S1_at--322--515	1	Chr06:23181916..23181940 (25 bp)	GCAACATACACTTTAACAGAGCTAG	LOC_Os06g39040
OsAffx.28001.1.S1_at--612--117	1	Chr06:23181939..23181963 (25 bp)	AGTAATGCCACTGTTGGAGAAAGCA	LOC_Os06g39040
OsAffx.28001.1.S1_at--331--919	1	Chr06:23181944..23181968 (25 bp)	TGCCACTGTTGGAGAAAGCAGCACC	LOC_Os06g39040

Target Sequence

GGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATACACTTTAACAGAGCTAGTAATGCCACTGTTGGAGAAAGCA
GCACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis