Browse Element(s) Details


OsAffx.15829.1.S1_at

Description tigr:9634.m03724
TID=OsAffx.15829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3900011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000OsAffx.15829.1.S1_at11/116+23155212..23155634hypothetical protein
LOC_Os06g39010OsAffx.15830.1.S1_at11/116+23156564..23157463hypothetical protein
LOC_Os06g39020NANA6+23164710..23169275retrotransposon protein, putative, unclassified
LOC_Os06g39030OsAffx.28000.1.A1_at11/116+23171472..23172146hypothetical protein
LOC_Os06g39040OsAffx.28001.1.S1_s_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040OsAffx.28001.1.S1_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15829.1.S1_at--944--1291Chr06:23155246..23155270 (25 bp)
AGATGCGCGGAGATGACCGTCTCGA
LOC_Os06g39000
OsAffx.15829.1.S1_at--60--5011Chr06:23155304..23155328 (25 bp)
GCAGGCAATGCTAGCGCGTGGATAC
LOC_Os06g39000
OsAffx.15829.1.S1_at--229--3011Chr06:23155310..23155334 (25 bp)
AATGCTAGCGCGTGGATACGGCCGC
LOC_Os06g39000
OsAffx.15829.1.S1_at--428--7551Chr06:23155390..23155414 (25 bp)
GGGCGGATACGACATCCCCGTCCTT
LOC_Os06g39000
OsAffx.15829.1.S1_at--639--1851Chr06:23155398..23155422 (25 bp)
ACGACATCCCCGTCCTTGGGTGCGG
LOC_Os06g39000
OsAffx.15829.1.S1_at--850--4671Chr06:23155422..23155446 (25 bp)
GCGGCGGTAGCCTCGGACTGGGTAG
LOC_Os06g39000
OsAffx.15829.1.S1_at--643--5731Chr06:23155437..23155461 (25 bp)
GACTGGGTAGATCAACCACTGAAGT
LOC_Os06g39000
OsAffx.15829.1.S1_at--845--2671Chr06:23155468..23155492 (25 bp)
AAGCGACAGATTTGCTCTTAGGAGC
LOC_Os06g39000
OsAffx.15829.1.S1_at--577--8451Chr06:23155501..23155525 (25 bp)
TGGCCTTGGGACAGCGGCGACACCC
LOC_Os06g39000
OsAffx.15829.1.S1_at--546--8391Chr06:23155516..23155540 (25 bp)
GGCGACACCCATGGAAGCGACAGAT
LOC_Os06g39000
OsAffx.15829.1.S1_at--933--4171Chr06:23155523..23155547 (25 bp)
CCCATGGAAGCGACAGATTTGCGGT
LOC_Os06g39000
Target Sequence 
AGATGCGCGGAGATGACCGTCTCGACTCGGGGGGCGCATGGAGACGGCGTCCTTGGGGGCAGGCAATGCTAGCGCGTGGA
TACGGCCGCTGGCTCGGGGGGCGCGTGGATCCAACGACCTCGGGGCGGATCCGCCGCCAGCTTGGGGCGGATACGACATC
CCCGTCCTTGGGTGCGGCGGCGGTAGCCTCGGACTGGGTAGATCAACCACTGAAGTTGACAAAAGCGACAGATTTGCTCT
TAGGAGCGGTGGCGGTGGCCTTGGGACAGCGGCGACACCCATGGAAGCGACAGATTTGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis