Browse Element(s) Details


Os.12667.1.S1_at

Description gb:AK111758.1
DB_XREF= gi:37988421
TID=Os.12667.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058G03, full insert sequence.
FL= gb:AK111758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3897011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38950Os.52171.1.S1_at11/116+23104231..23112077ABC transporter family protein, putative, expressed
LOC_Os06g38960Os.9684.1.S1_at11/116+23118062..23121172expressed protein
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000OsAffx.15829.1.S1_at11/116+23155212..23155634hypothetical protein
LOC_Os06g39010OsAffx.15830.1.S1_at11/116+23156564..23157463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12667.1.S1_at--680--6451Chr06:23134953..23134977 (25 bp)
GATCACAGGGATGAGTAAGCACAAA
LOC_Os06g38970
Os.12667.1.S1_at--93--7611Chr06:23134984..23135008 (25 bp)
GGGCAATTTCACTTCTCCGGGTCAA
LOC_Os06g38970
Os.12667.1.S1_at--756--3111Chr06:23134988..23135012 (25 bp)
AATTTCACTTCTCCGGGTCAAGCAA
LOC_Os06g38970
Os.12667.1.S1_at--506--10571Chr06:23134996..23135020 (25 bp)
TTCTCCGGGTCAAGCAAAAAGATGC
LOC_Os06g38970
Os.12667.1.S1_at--292--2891Chr06:23135057..23135081 (25 bp)
AAGGGTGAGTTTGTTGTGCTGTTTC
LOC_Os06g38970
Os.12667.1.S1_at--960--1191Chr06:23135064..23135088 (25 bp)
AGTTTGTTGTGCTGTTTCGTTCCTT
LOC_Os06g38970
Os.12667.1.S1_at--962--4311Chr06:23135136..23135160 (25 bp)
CCTTGTGTATAGAAGTTCTCTTGTT
LOC_Os06g38970
Os.12667.1.S1_at--74--10371Chr06:23135161..23135185 (25 bp)
TTTTTCCTCTTGTTGCTCAAAGTTG
LOC_Os06g38970
Os.12667.1.S1_at--542--9091Chr06:23135174..23135198 (25 bp)
TGCTCAAAGTTGTAACATTCCAGCT
LOC_Os06g38970
Os.12667.1.S1_at--772--2071Chr06:23135188..23135212 (25 bp)
ACATTCCAGCTAGAGCAATTAAGAC
LOC_Os06g38970
Os.12667.1.S1_at--436--491Chr06:23135244..23135268 (25 bp)
ATCTGGGGACAGCATTTACATCTCC
LOC_Os06g38970
Target Sequence 
GATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTC
AGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA
GGTGTGTGTGTGTTCGTCCTTTTNCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACAT
TCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCNATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis