Browse Element(s) Details


Os.9684.1.S1_at

Description gb:AK073322.1
DB_XREF= gi:32983345
TID=Os.9684.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030G15, full insert sequence.
FL= gb:AK073322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3896011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38930OsAffx.27996.1.S1_at11/116+23093021..23096527Leucine Rich Repeat family protein, expressed
LOC_Os06g38940Os.22756.1.S1_at10/116+23097908..23101010Protein UNQ2508/PRO5996, putative, expressed
LOC_Os06g38950Os.52171.1.S1_at11/116+23104231..23112077ABC transporter family protein, putative, expressed
LOC_Os06g38960Os.9684.1.S1_at11/116+23118062..23121172expressed protein
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9684.1.S1_at--557--4391Chr06:23120390..23120414 (25 bp)
GCCAAGATCGCTGAATTCTGATGCA
LOC_Os06g38960
Os.9684.1.S1_at--1021--6771Chr06:23120472..23120496 (25 bp)
GTTAGAGGCTCCTACAACCGGAATC
LOC_Os06g38960
Os.9684.1.S1_at--402--8211Chr06:23120491..23120515 (25 bp)
GGAATCCTGCAAAAGAAGCCATCAC
LOC_Os06g38960
Os.9684.1.S1_at--679--3371Chr06:23120579..23120603 (25 bp)
CAGCGAGGCTTTGCCAGTTGGTACA
LOC_Os06g38960
Os.9684.1.S1_at--8--6571Chr06:23120943..23120967 (25 bp)
GATTCAAATCTTTTTATCGCTGGAT
LOC_Os06g38960
Os.9684.1.S1_at--480--1331Chr06:23120975..23120999 (25 bp)
AGAGTGTGTGGTGCTTGTTTTTTCC
LOC_Os06g38960
Os.9684.1.S1_at--78--10371Chr06:23120993..23121017 (25 bp)
TTTTTCCCCTCATTTGTTCATATAT
LOC_Os06g38960
Os.9684.1.S1_at--962--6731Chr06:23121008..23121032 (25 bp)
GTTCATATATCGCTGGAGCTTGCCT
LOC_Os06g38960
Os.9684.1.S1_at--983--4711Chr06:23121019..23121043 (25 bp)
GCTGGAGCTTGCCTTATTATCAAAA
LOC_Os06g38960
Os.9684.1.S1_at--942--731Chr06:23121087..23121111 (25 bp)
ATGTTTGCTTTATTATCCCTTTGTT
LOC_Os06g38960
Os.9684.1.S1_at--805--3151Chr06:23121120..23121144 (25 bp)
AATTCTGAATTGTCCAGTCATGCAT
LOC_Os06g38960
Target Sequence 
GCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAAGGAAGCAGCTAAAAAAGNCAACATTCAGAAGAAGCCTGATGCAA
AGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCAAGAAGCAGGTC
AAGGGGCAGAAGGAAGATTGCAATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCAAGAACCTGTTGATGTGGTGAA
GGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCAATGGATCTTGGCATAGCCCAAGAAATCTAGA
ACANCCAAACCGACTTCAGATTCAAATCTTTTTATCGCTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCA
TTTGTTCATATATCGCTGGAGCTTGCCTTATTATCAAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGT
GGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGCAATTCTGAATTGTCCAGTCATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis