Browse Element(s) Details

Os.22756.1.S1_at

Description

gb:AK071741.1
DB_XREF= gi:32981764
TID=Os.22756.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110B12, full insert sequence.
FL= gb:AK071741.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g38940	10/11	Protein UNQ2508/PRO5996, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g38890	Os.41695.15.S1_s_at	11/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.3.S1_x_at	4/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.2.S1_x_at	3/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.5.S1_x_at	3/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.4.S1_x_at	1/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38900	NA	NA	6	+	23080487..23083994	SWIM zinc finger family protein
LOC_Os06g38910	OsAffx.15828.1.S1_at	10/11	6	+	23086241..23087197	hypothetical protein
LOC_Os06g38920	OsAffx.19682.1.S1_at	8/11	6	+	23087900..23091073	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38930	OsAffx.27996.1.S1_at	11/11	6	+	23093021..23096527	Leucine Rich Repeat family protein, expressed
LOC_Os06g38940	Os.22756.1.S1_at	10/11	6	+	23097908..23101010	Protein UNQ2508/PRO5996, putative, expressed
LOC_Os06g38950	Os.52171.1.S1_at	11/11	6	+	23104231..23112077	ABC transporter family protein, putative, expressed
LOC_Os06g38960	Os.9684.1.S1_at	11/11	6	+	23118062..23121172	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22756.1.S1_at--189--221	1	Chr06:23098426..23098450 (25 bp)	ACAACTGCCAGTACCCATAGATATC	LOC_Os06g38940
Os.22756.1.S1_at--325--119	1	Chr06:23098388..23098412 (25 bp)	AGTACCACTCTGTCTTTGTATGTCC	LOC_Os06g38940
Os.22756.1.S1_at--889--1025	1	Chr06:23098374..23098398 (25 bp)	TTTGTATGTCCGGTGCTCAGAGAGC	LOC_Os06g38940
Os.22756.1.S1_at--805--631	1	Chr06:23098341..23098365 (25 bp)	GATGAAAACCCTCCAATGCTGATGC	LOC_Os06g38940
Os.22756.1.S1_at--788--301	1	Chr06:23098327..23098351 (25 bp)	AATGCTGATGCCCTGCGGACACGTT	LOC_Os06g38940
Os.22756.1.S1_at--201--901	1	Chr06:23098194..23098218 (25 bp)	TGAATGTTCTTTCCCTGCTCAGATA	LOC_Os06g38940
Os.22756.1.S1_at--603--879	1	Chr06:23098157..23098181 (25 bp)	TGTTAATTTATGTTCCTGTGGCACC	LOC_Os06g38940
Os.22756.1.S1_at--545--549	1	Chr06:23098092..23098116 (25 bp)	GAACATTCTAGTGCTGTCTCTGGAT	LOC_Os06g38940
Os.22756.1.S1_at--934--285	1	Chr06:23097996..23098020 (25 bp)	AAGTGCTACTAGTCACTCTGGCAGT	LOC_Os06g38940
Os.22756.1.S1_at--1050--199	1	Chr06:23097982..23098006 (25 bp)	ACTCTGGCAGTCTTAGGGCTTATGA	LOC_Os06g38940
Os.22756.1.S1_at--669--1087	1	Chr06:23097908..23097932 (25 bp)	TTGGCAGTGAGCCTTTCTGTTTAAG	NONE

Target Sequence

ACAACTGCCAGTACCCATAGATATCGGACCAGAATTCCAGTACCACTCTGTCTTTGTATGTCCGGTGCTCAGAGAGCAGT
CGAGTGATGAAAACCCTCCAATGCTGATGCCCTGCGGACACGTTGTGTCGAAACAATCGATAATGAAGCTATCAAAGAGC
AGCTCCAGACCCTTCAAATGCCCATACTGTCCCTCAGAGGCTGTTGCTTNCTCAGTGCAAGCAGCTACATTTCTGAATGT
TCTTTCCCTGCTCAGATATGTTTATACACGTGTTAATTTATGTTCCTGTGGCACCCATCCAATAACTACCTTGTAATATA
ATCCTGTATGTTAATGAACATTCTAGTGCTGTCTCTGGATGTTAATCTGTACAGNNGCNNATTCCTGNTCGTTTTATCAA
ATTATATCTCTGGCATGACTGAACAGAAAATAAGTGCTACTAGTCACTCTGGCAGTCTTAGGGCTTATGATTGTGTATTG
GTTTTACAGCCATGTAGATCGGTCAAATCATGTGTAAAATTGGCAGTGAGCCTTTCTGTTTAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis