Browse Element(s) Details


Os.52171.1.S1_at

Description gb:AK065426.1
DB_XREF= gi:32975444
TID=Os.52171.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005O19, full insert sequence.
FL= gb:AK065426.1 gb:AK098963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3895011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38900NANA6+23080487..23083994SWIM zinc finger family protein
LOC_Os06g38910OsAffx.15828.1.S1_at10/116+23086241..23087197hypothetical protein
LOC_Os06g38920OsAffx.19682.1.S1_at8/116+23087900..23091073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38930OsAffx.27996.1.S1_at11/116+23093021..23096527Leucine Rich Repeat family protein, expressed
LOC_Os06g38940Os.22756.1.S1_at10/116+23097908..23101010Protein UNQ2508/PRO5996, putative, expressed
LOC_Os06g38950Os.52171.1.S1_at11/116+23104231..23112077ABC transporter family protein, putative, expressed
LOC_Os06g38960Os.9684.1.S1_at11/116+23118062..23121172expressed protein
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52171.1.S1_at--326--5611Chr06:23104803..23104827 (25 bp)
GACAATGACAACATCCCCGGAGTTT
LOC_Os06g38950
Os.52171.1.S1_at--543--1471Chr06:23104765..23104789 (25 bp)
AGAATCTGGCGCGAAAGCTCTCACC
LOC_Os06g38950
Os.52171.1.S1_at--915--2351Chr06:23104752..23104776 (25 bp)
AAAGCTCTCACCGAACGCGAGGAAA
LOC_Os06g38950
Os.52171.1.S1_at--804--2831Chr06:23104729..23104753 (25 bp)
AAGTATACCATCTGTCTGGGACACA
LOC_Os06g38950
Os.52171.1.S1_at--242--1911Chr06:23104588..23104612 (25 bp)
ACGTGTTCGTCAAGGTCGCCAAAGG
LOC_Os06g38950
Os.52171.1.S1_at--107--4591Chr06:23104562..23104586 (25 bp)
GCGCAGTCGAGCGAAGAACTCTCAT
LOC_Os06g38950
Os.52171.1.S1_at--262--6871Chr06:23104510..23104534 (25 bp)
GTTTGTGCTGTTCTGATGTACTTTG
LOC_Os06g38950
Os.52171.1.S1_at--487--9251Chr06:23104423..23104447 (25 bp)
TCCTATGGCATGTTGTTTTTGTTCA
LOC_Os06g38950
Os.52171.1.S1_at--209--751Chr06:23104298..23104322 (25 bp)
ATGTTTGTCAACTTGTTGCTGCACG
LOC_Os06g38950
Os.52171.1.S1_at--1078--6671Chr06:23104284..23104308 (25 bp)
GTTGCTGCACGTATATGTCTCTGCA
LOC_Os06g38950
Os.52171.1.S1_at--314--351Chr06:23104252..23104276 (25 bp)
ATAAACCTTTGACCAGAAGCCTTTG
LOC_Os06g38950
Target Sequence 
GACAATGACAACATCCCCGGAGTTTGAGCAAGAGGTCGAGAATCTGGCGCGAAAGCTCTCACCGAACGCGAGGAAAGTAT
ACCATCTGTCTGGGACACAGAAGTACGAGCTGCCGAAGCAGCAGGTGAGGATCGCGGATGTGTTCATGGCCGTGGAGAAT
TTCAAGAGGAGGACGGAGGTCCAGGCGTGGGGGCTCGCGGACACCACCATGGAAGACGTGTTCGTCAAGGTCGCCAAAGG
GGCGCAGTCGAGCGAAGAACTCTCATGATGATCTGGTGCAAAAATGATGTTTTGTTTGTGCTGTTCTGATGTACTTTGTA
CAGAAAGTAGGATAAATCTTTTGTCAGGCATTAGTTTGCTTATTTTTCTGTACATAAGGATCCTATGGCATGTTGTTTTT
GTTCAATCTTCTTTTGGTCTTTTGTAGATAAGGTTTGTGTTATTGTGTATGTTATAGAAAAAAAGATGGTGTGTGTAGGC
GTATATTGGTGATTGTATTTTATATATGTTTGTCAACTTGTTGCTGCACGTATATGTCTCTGCAAAGAATCATAAACCTT
TGACCAGAAGCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis