Browse Element(s) Details


OsAffx.27996.1.S1_at

Description tigr:9634.m03716
TID=OsAffx.27996.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3893011/11Leucine Rich Repeat family protein, expressed
LOC_Os06g387804/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38880OsAffx.5053.1.S1_at11/116+23068891..23069148hypothetical protein
LOC_Os06g38890Os.41695.15.S1_s_at11/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.3.S1_x_at4/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.2.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.5.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.4.S1_x_at1/116+23072514..23078699hypothetical protein
LOC_Os06g38900NANA6+23080487..23083994SWIM zinc finger family protein
LOC_Os06g38910OsAffx.15828.1.S1_at10/116+23086241..23087197hypothetical protein
LOC_Os06g38920OsAffx.19682.1.S1_at8/116+23087900..23091073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38930OsAffx.27996.1.S1_at11/116+23093021..23096527Leucine Rich Repeat family protein, expressed
LOC_Os06g38940Os.22756.1.S1_at10/116+23097908..23101010Protein UNQ2508/PRO5996, putative, expressed
LOC_Os06g38950Os.52171.1.S1_at11/116+23104231..23112077ABC transporter family protein, putative, expressed
LOC_Os06g38960Os.9684.1.S1_at11/116+23118062..23121172expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27996.1.S1_at--185--2652Chr06:23095895..23095919 (25 bp)
AACCAGTGTGAATTGCCATTAGTAC
LOC_Os06g38930
OsAffx.27996.1.S1_at--703--10072Chr06:23095954..23095978 (25 bp)
TAGTGACATGGTTGCACACGTCAGT
LOC_Os06g38930
OsAffx.27996.1.S1_at--340--2151Chr06:23096217..23096241 (25 bp)
ACAGCTTTGGAATCCTTCTCTTAGA
LOC_Os06g38930
OsAffx.27996.1.S1_at--82--6951Chr06:23096253..23096277 (25 bp)
GTAGCAGTCCTACCGATGAAAATTT
LOC_Os06g38930
OsAffx.27996.1.S1_at--787--811Chr06:23096280..23096304 (25 bp)
ATGGTGACACAACCCTGCATGATTT
LOC_Os06g38930
OsAffx.27996.1.S1_at--173--4951Chr06:23096315..23096339 (25 bp)
GCATTGCCCGATAATACTCACGAGG
LOC_Os06g38930
OsAffx.27996.1.S1_at--887--3092Chr06:23096327..23096351 (25 bp)
AATACTCACGAGGTTGTTGATCCCA
LOC_Os06g38930
OsAffx.27996.1.S1_at--1148--6011Chr06:23096390..23096414 (25 bp)
GAGAGGTGTTTCGTTCCATTGGTTA
LOC_Os06g38930
OsAffx.27996.1.S1_at--259--2231Chr06:23096415..23096439 (25 bp)
AAATAGGACTCTCATGTTCAATGGC
LOC_Os06g38930
OsAffx.27996.1.S1_at--560--8292Chr06:23096437..23096461 (25 bp)
GGCATTGCCTAGAGAGCGGCCAGAA
LOC_Os06g38930
OsAffx.27996.1.S1_at--820--7591Chr06:23096465..23096489 (25 bp)
GGGCAGGTTTCTACCATGATTCTTA
LOC_Os06g38930
Target Sequence 
AACCAGTGTGAATTGCCATTAGTACATTGTGATTTGAAGCCAAGCAATATTCTGTTGGATAGTGACATGGTTGCACACGT
CAGTGACTTTGGCCTAGCAAGATTTGTATACACAAGATCGAATGCACATAAAGATATATCAACAAGCTTGGCTTGTCTAA
AAGGATCTATTGGATATATTCCACCGGAGTATGGTATGAACGAAGATATCTCAACCAAGGGTGATGTCTACAGCTTTGGA
ATCCTTCTCTTAGAAATGGTAACAGGTAGCAGTCCTACCGATGAAAATTTTAATGGTGACACAACCCTGCATGATTTTGT
TGATAGAGCATTGCCCGATAATACTCACGAGGTTGTTGATCCCACAATGCTACAAGATGATATCAGTGTAGCCGATATGA
TGGAGAGGTGTTTCGTTCCATTGGTTAAAATAGGACTCTCATGTTCAATGGCATTGCCTAGAGAGCGGCCAGAAATGGGG
CAGGTTTCTACCATGATTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis