Browse Element(s) Details

OsAffx.5053.1.S1_at

Description

tigr:9634.m03711
TID=OsAffx.5053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g38880	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g38820	OsAffx.19542.3.S1_x_at	3/11	6	+	23043215..23047155	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830	OsAffx.15825.1.S1_at	11/11	6	+	23048806..23051319	Leucine Rich Repeat family protein, expressed
LOC_Os06g38840	OsAffx.15826.1.S1_at	2/11	6	+	23053425..23055664	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38840	Os.46459.1.S1_at	1/11	6	+	23053425..23055664	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38850	OsAffx.27999.1.S1_at	11/11	6	+	23056312..23056587	hypothetical protein
LOC_Os06g38870	OsAffx.15826.1.S1_at	9/11	6	+	23065612..23067154	hypothetical protein
LOC_Os06g38870	Os.19061.2.S1_at	1/11	6	+	23065612..23067154	hypothetical protein
LOC_Os06g38880	OsAffx.5053.1.S1_at	11/11	6	+	23068891..23069148	hypothetical protein
LOC_Os06g38890	Os.41695.15.S1_s_at	11/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.3.S1_x_at	4/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.2.S1_x_at	3/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.5.S1_x_at	3/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38890	Os.41695.4.S1_x_at	1/11	6	+	23072514..23078699	hypothetical protein
LOC_Os06g38900	NA	NA	6	+	23080487..23083994	SWIM zinc finger family protein
LOC_Os06g38910	OsAffx.15828.1.S1_at	10/11	6	+	23086241..23087197	hypothetical protein
LOC_Os06g38920	OsAffx.19682.1.S1_at	8/11	6	+	23087900..23091073	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38930	OsAffx.27996.1.S1_at	11/11	6	+	23093021..23096527	Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5053.1.S1_at--1159--811	1	Chr06:23068918..23068942 (25 bp)	GGACTGGACGACAGTGTGGCACCAT	LOC_Os06g38880
OsAffx.5053.1.S1_at--880--185	1	Chr06:23068925..23068949 (25 bp)	ACGACAGTGTGGCACCATTGTGGCA	LOC_Os06g38880
OsAffx.5053.1.S1_at--106--851	1	Chr06:23068934..23068958 (25 bp)	TGGCACCATTGTGGCAGAACCGCAG	LOC_Os06g38880
OsAffx.5053.1.S1_at--652--3	1	Chr06:23068941..23068965 (25 bp)	ATTGTGGCAGAACCGCAGTCTAGCA	LOC_Os06g38880
OsAffx.5053.1.S1_at--881--849	1	Chr06:23068945..23068969 (25 bp)	TGGCAGAACCGCAGTCTAGCAAAGG	LOC_Os06g38880
OsAffx.5053.1.S1_at--552--243	1	Chr06:23069029..23069053 (25 bp)	AAAAGCTTAGCTCAGGGTTTCCCTG	LOC_Os06g38880
OsAffx.5053.1.S1_at--81--107	1	Chr06:23069042..23069066 (25 bp)	AGGGTTTCCCTGAGCTGGCAACAAT	LOC_Os06g38880
OsAffx.5053.1.S1_at--1106--683	1	Chr06:23069045..23069069 (25 bp)	GTTTCCCTGAGCTGGCAACAATGAC	LOC_Os06g38880
OsAffx.5053.1.S1_at--581--385	1	Chr06:23069051..23069075 (25 bp)	CTGAGCTGGCAACAATGACATCTTT	LOC_Os06g38880
OsAffx.5053.1.S1_at--971--67	1	Chr06:23069065..23069089 (25 bp)	ATGACATCTTTGAGCGCCATGATCG	LOC_Os06g38880
OsAffx.5053.1.S1_at--810--359	1	Chr06:23069093..23069117 (25 bp)	CTTGGGGCGTTGTTGAGCTACCACC	LOC_Os06g38880

Target Sequence

GGACTGGACGACAGTGTGGCACCATTGTGGCAGAACCGCAGTCTAGCAAAGGTTGTTCGGTTGGTGGAGAACCGAGGTGG
CGAAGATAGGTGCGGGAAGGGTGCTGCAGGAAAAAGCTTAGCTCAGGGTTTCCCTGAGCTGGCAACAATGACATCTTTGA
GCGCCATGATCGCCCCTTGGGGCGTTGTTGAGCTACCACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis