Browse Element(s) Details


OsAffx.15825.1.S1_at

Description tigr:9634.m03706
TID=OsAffx.15825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=leucine-rich-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3883011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38790OsAffx.27997.1.S1_at11/116+23022773..23025628ZmEBE-1 protein, putative
LOC_Os06g38800OsAffx.5052.1.S1_at11/116+23032949..23033371hypothetical protein
LOC_Os06g38810OsAffx.20993.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810OsAffx.27266.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810Os.51832.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38820OsAffx.19542.3.S1_x_at3/116+23043215..23047155retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830OsAffx.15825.1.S1_at11/116+23048806..23051319Leucine Rich Repeat family protein, expressed
LOC_Os06g38840OsAffx.15826.1.S1_at2/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38840Os.46459.1.S1_at1/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38850OsAffx.27999.1.S1_at11/116+23056312..23056587hypothetical protein
LOC_Os06g38870OsAffx.15826.1.S1_at9/116+23065612..23067154hypothetical protein
LOC_Os06g38870Os.19061.2.S1_at1/116+23065612..23067154hypothetical protein
LOC_Os06g38880OsAffx.5053.1.S1_at11/116+23068891..23069148hypothetical protein
LOC_Os06g38890Os.41695.15.S1_s_at11/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.3.S1_x_at4/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.2.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.5.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.4.S1_x_at1/116+23072514..23078699hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15825.1.S1_at--873--31Chr06:23049381..23049405 (25 bp)
ATTGGTGGCTCGATCAATCTTGATA
LOC_Os06g38830
OsAffx.15825.1.S1_at--824--5731Chr06:23049335..23049359 (25 bp)
GACTGTCAGGACAAATTCCCTCTGC
LOC_Os06g38830
OsAffx.15825.1.S1_at--597--10871Chr06:23049308..23049332 (25 bp)
TTGGCGACTGTGTCCACTTAAGCTC
LOC_Os06g38830
OsAffx.15825.1.S1_at--748--2031Chr06:23049293..23049317 (25 bp)
ACTTAAGCTCTCTCCGTATGGAAGG
LOC_Os06g38830
OsAffx.15825.1.S1_at--877--5251Chr06:23049162..23049186 (25 bp)
GAATCCTTTGGGTCCATGAAGCTTC
LOC_Os06g38830
OsAffx.15825.1.S1_at--318--2711Chr06:23049144..23049168 (25 bp)
AAGCTTCTCAATTTGTCCTTCAATG
LOC_Os06g38830
OsAffx.15825.1.S1_at--585--791Chr06:23049043..23049067 (25 bp)
ATGTGGTACATATCCATTGCTACAG
LOC_Os06g38830
OsAffx.15825.1.S1_at--325--9091Chr06:23049026..23049050 (25 bp)
TGCTACAGTTACCACTCTGCAATGT
LOC_Os06g38830
OsAffx.15825.1.S1_at--1022--211Chr06:23048943..23048967 (25 bp)
ATTTGTCTGGCTCTAACATCATGTT
LOC_Os06g38830
OsAffx.15825.1.S1_at--129--751Chr06:23048923..23048947 (25 bp)
ATGTTTAGCGCTCATTCTACTGAAG
LOC_Os06g38830
OsAffx.15825.1.S1_at--758--3231Chr06:23048880..23048904 (25 bp)
CAAGCATCTGATCCTTCCTGTAAGG
LOC_Os06g38830
Target Sequence 
ATTGGTGGCTCGATCAATCTTGATATTCTAAATATTTCCAATAACCGACTGTCAGGACAAATTCCCTCTGCTCTTGGCGA
CTGTGTCCACTTAAGCTCTCTCCGTATGGAAGGGAACCTTCTTGATGGACGAATTCCTGATTCTTTCATAAATTTAAGAG
GCATTGTTGAGTTAGATCTTTCTCAGAACAATCTATCTGGTAAAATACCTGAATTCATGGAATCCTTTGGGTCCATGAAG
CTTCTCAATTTGTCCTTCAATGATTTTGAAGGACAGGTACCAACTGAAGGGATATTTCAGAATGCAAGTGAGGTTTTTAT
CCAAGGGAACAAGAAGTTATGTGGTACATATCCATTGCTACAGTTACCACTCTGCAATGTAAAGCCATCAAAGGGAAAGC
ACACCAATAAAATACTTAAGATAGTAGGACCTATAGCTATTTGTCTGGCTCTAACATCATGTTTAGCGCTCATTCTACTG
AAGAAGAGGAATAAAGTCAAGCAAGCATCTGATCCTTCCTGTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis