Browse Element(s) Details


OsAffx.27997.1.S1_at

Description tigr:9634.m03702
TID=OsAffx.27997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ437283 DD1A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3879011/11ZmEBE-1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38740OsAffx.27994.1.S1_at11/116+22997559..22998335hypothetical protein
LOC_Os06g38750OsAffx.5050.1.S1_at11/116+22998850..23000440expressed protein
LOC_Os06g38760OsAffx.27995.1.S1_at11/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38760Os.27322.1.S1_x_at1/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38770NANA6+23015239..23016255expressed protein
LOC_Os06g38780OsAffx.27996.1.S1_at4/116+23016864..23019935Leucine Rich Repeat family protein, expressed
LOC_Os06g38790OsAffx.27997.1.S1_at11/116+23022773..23025628ZmEBE-1 protein, putative
LOC_Os06g38800OsAffx.5052.1.S1_at11/116+23032949..23033371hypothetical protein
LOC_Os06g38810OsAffx.20993.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810OsAffx.27266.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810Os.51832.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38820OsAffx.19542.3.S1_x_at3/116+23043215..23047155retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830OsAffx.15825.1.S1_at11/116+23048806..23051319Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27997.1.S1_at--1119--9811Chr06:23023448..23023472 (25 bp)
TAACAGATCCCTCCCATATGGACGA
LOC_Os06g38790
OsAffx.27997.1.S1_at--486--271Chr06:23023433..23023457 (25 bp)
ATATGGACGAAGACTGCCCTGGTTT
LOC_Os06g38790
OsAffx.27997.1.S1_at--377--9811Chr06:23023157..23023181 (25 bp)
TAACAAGCATCCTGAACTCGTCGGG
LOC_Os06g38790
OsAffx.27997.1.S1_at--908--2431Chr06:23023111..23023135 (25 bp)
AAAAGTCTATCTTACTCTGCCATCA
LOC_Os06g38790
OsAffx.27997.1.S1_at--768--10671Chr06:23023032..23023056 (25 bp)
TTCCACCTCCTATGGGCAATGGTTA
LOC_Os06g38790
OsAffx.27997.1.S1_at--316--10491Chr06:23023010..23023034 (25 bp)
TTACATGGCAGTTGACGGTGGCAAT
LOC_Os06g38790
OsAffx.27997.1.S1_at--320--2371Chr06:23022968..23022992 (25 bp)
AAACCTTCAGTTCATTGATGGGCAA
LOC_Os06g38790
OsAffx.27997.1.S1_at--889--5951Chr06:23022895..23022919 (25 bp)
GAGAATATCTACACCTTCACATCTA
LOC_Os06g38790
OsAffx.27997.1.S1_at--1115--8591Chr06:23022866..23022890 (25 bp)
TGGTGACCAGTTTTTCTACGGTGGC
LOC_Os06g38790
OsAffx.27997.1.S1_at--612--10011Chr06:23022827..23022851 (25 bp)
TAGCTTGGGAGCCATATTGCGCACT
LOC_Os06g38790
OsAffx.27997.1.S1_at--372--231Chr06:23022814..23022838 (25 bp)
ATATTGCGCACTCATGTCCTTTACT
LOC_Os06g38790
Target Sequence 
TAACAGATCCCTCCCATATGGACGAAGACTGCCCTGGTTTTCGACCCGAGAGGGGCGCATACATACGTCCTGGCGACCCA
ATCCCTGGTATCTCACAACCAAATGGAGCCAAGCAATACATCACACTTAAAGTATTCAAGGATATGGCATCAGGGGATTG
GTTGGTGCACTATGGGTTTAATAACAAGCATCCTGAACTCGTCGGGCGCATCCCTTTGTCATTCTTCAAAAGTCTATCTT
ACTCTGCCATCAATATGTGGTTTGGAGGCATTGTAGTTACTAATGTAACTTTTCAACCAACACCTCTTCCACCTCCTATG
GGCAATGGTTACATGGCAGTTGACGGTGGCAATATGGCAGTATCCACGAAAAACCTTCAGTTCATTGATGGGCAAGGACG
AGCTTGGTCGGCAGAGAATGATTTGATTGGCTTCTCCACCAATGAGAATATCTACACCTTCACATCTATTGTTGGTGACC
AGTTTTTCTACGGTGGCCCCTTTCGGCAGGCTAGCTTGGGAGCCATATTGCGCACTCATGTCCTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis