Browse Element(s) Details


Os.51832.1.S1_at

Description gb:AK063955.1
DB_XREF= gi:32973973
TID=Os.51832.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F12, full insert sequence.
FL= gb:AK063955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4241211/11expressed protein
LOC_Os07g149301/11hypothetical protein
LOC_Os02g221001/11Rhomboid family protein, expressed
LOC_Os08g136501/11expressed protein
LOC_Os10g225201/11Cellulase containing protein, expressed
LOC_Os06g388101/11hypothetical protein
LOC_Os07g264201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_x_at11/112+25533613..25534355Ripening-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51832.1.S1_at--368--7931Chr02:25509205..25509229 (25 bp)
GGATTTCAATCTGCACTGAGACTTC
LOC_Os02g42412
Os.51832.1.S1_at--297--6391Chr02:25509131..25509155 (25 bp)
GATCGAATCCTGTATGGCCCTTGAG
LOC_Os02g42412
Os.51832.1.S1_at--344--8411Chr02:25509116..25509140 (25 bp)
GGCCCTTGAGCACCTAGATGTTCGG
LOC_Os02g42412
Os.51832.1.S1_at--917--10031Chr02:25509102..25509126 (25 bp)
TAGATGTTCGGTCATGCCCTCAGGT
LOC_Os02g42412
Os.51832.1.S1_at--180--2691Chr02:25509057..25509081 (25 bp)
AAGCTGGGCTGCAATTTCCTGGTAG
LOC_Os02g42412
Os.51832.1.S1_at--422--6371Chr02:25508995..25509019 (25 bp)
GATCCATCTGTTGCTATATTCTTTT
LOC_Os02g42412
Os.51832.1.S1_at--654--6451Chr02:25508965..25508989 (25 bp)
GATCAATAGCGTCCCATAATTCTTT
LOC_Os02g42412
Os.51832.1.S1_at--965--3111Chr02:25508948..25508972 (25 bp)
AATTCTTTTCTAGATTTCGCCGAAG
LOC_Os02g42412
Os.51832.1.S1_at--748--1051Chr02:25508814..25508838 (25 bp)
AGGTGTGCACTGTTCAATTCTCATG
LOC_Os02g42412
Os.51832.1.S1_at--234--111Chr02:25508798..25508822 (25 bp)
ATTCTCATGTGCTGTACCTGTAGTC
LOC_Os02g42412
Os.51832.1.S1_at--784--84938Chr12:3324041..3324071 (25 bp)
TGGCTTCTAGTTCATGATTCTACAA
NONE
Target Sequence 
GGATTTCAATCTGCACTGAGACTTCTGAAGATCAGCAGCTGTGTTAGGATCACAGTTGCAGGAGTCAGGAATGTGATCGA
ATCCTGTATGGCCCTTGAGCACCTAGATGTTCGGTCATGCCCTCAGGTCACAAGGCAGAGCTGTGAGCAAGCTGGGCTGC
AATTTCCTGGTAGCTGCAAGGTAAACTTTGAAGGCAGCTTATCTGAGTCTGATCCATCTGTTGCTATATTCTTTTAGGAC
GATCAATAGCGTCCCATAATTCTTTTCTAGATTTCGCCGAAGAACTTGAGAACTCATCATGTCAAAATGTACCTGATATT
GTGGTTGGTTTTGGGCGTGTGTTGCACAATTTGAGGTAGAACTGGATGATGCCGTGGATGAAAAAATGTGCAGGTGTGCA
CTGTTCAATTCTCATGTGCTGTACCTGTAGTCCTGTACTATGTNGAAAGTNGCACACTACAGATTCTTGGAATCTGTTGG
TTAGTACTTAGTAGTTAGCTTTTGAGAATATAGAGAAACTGGCTTCTAGTTCATGATTCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis