Browse Element(s) Details


Os.8962.1.S1_at

Description gb:AK069779.1
DB_XREF= gi:32979803
TID=Os.8962.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031H22, full insert sequence.
FL= gb:AK069779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4244011/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_x_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8962.1.S1_at--596--9151Chr02:25522355..25522379 (25 bp)
TGCGCGTCCCGTACAAGGTGACCAT
LOC_Os02g42440
Os.8962.1.S1_at--263--8931Chr02:25522337..25522361 (25 bp)
TGACCATCCCGCTGCGGAAGGTGAA
LOC_Os02g42440
Os.8962.1.S1_at--985--1171Chr02:25522271..25522295 (25 bp)
AGTACATCGAGGTCGTCACCAACGA
LOC_Os02g42440
Os.8962.1.S1_at--319--4631Chr02:25522165..25522189 (25 bp)
GCGATGACACGCACGAAGCGCGCAA
LOC_Os02g42440
Os.8962.1.S1_at--116--7971Chr02:25522101..25522125 (25 bp)
GGATCGGTCTCTTCGTGTCGTACGC
LOC_Os02g42440
Os.8962.1.S1_at--458--7331Chr02:25522060..25522084 (25 bp)
GTGCATCTGTGTCACTCTAGCTTGG
LOC_Os02g42440
Os.8962.1.S1_at--768--6911Chr02:25522009..25522033 (25 bp)
GTATGCGTAGGGTTGATCGATCACA
LOC_Os02g42440
Os.8962.1.S1_at--992--3491Chr02:25521983..25522007 (25 bp)
CATGTCGTTGTGTGTTGGGTCGCCA
LOC_Os02g42440
Os.8962.1.S1_at--1078--8451Chr02:25521954..25521978 (25 bp)
TGGCCTGCTGGTGGATTGATCGATC
LOC_Os02g42440
Os.8962.1.S1_at--873--6391Chr02:25521937..25521961 (25 bp)
GATCGATCGGCATGCAGTTTTGCAA
LOC_Os02g42440
Os.8962.1.S1_at--751--6791Chr02:25521921..25521945 (25 bp)
GTTTTGCAATTGCATCCAGCAGGTT
LOC_Os02g42440
Target Sequence 
TGCGCGTCCCGTACAAGGTGACCATCCCGCTGCGGAAGGTGAAGGCCGCCAAGCCGAGCGAGAACAAGCACAAGCCCGAG
CAGAAGTACATCGAGGTCGTCACCAACGACGGCTTCGAGTTCTGGTTCATGGGCTTCGTCAGCTACCACCGCTCGCTGCA
CCACCTGGAGCAGGCCGTCGCGCAGGCGCGGCGATGACACGCACGAAGCGCGCAAGCGCGCGCNACCCATGTCGTGGCGG
AGCTCGCTCTCGATCGGATCGGTCTCTTCGTGTCGTACGCTTGTGTGTGTGCGTGCGTGCATCTGTGTCACTCTAGCTTG
GTGATGCTTAGATGGGTTAGGATTTGTGTATGCGTAGGGTTGATCGATCACAACATGTCGTTGTGTGTTGGGTCGCCATG
GCTGGCCTGCTGGTGGATTGATCGATCGGCATGCAGTTTTGCAATTGCATCCAGCAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis