Browse Element(s) Details

OsAffx.27681.1.S1_at

Description

tigr:9634.m01722
TID=OsAffx.27681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g17080	10/11	hypothetical protein
LOC_Os02g42460	3/11	hypothetical protein
LOC_Os10g31610	3/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g17030	OsAffx.27348.1.S1_x_at	1/11	6	+	9875078..9878342	transposon protein, putative, unclassified, expressed
LOC_Os06g17040	NA	NA	6	+	9878981..9885328	retrotransposon protein, putative, unclassified
LOC_Os06g17050	OsAffx.4856.1.S1_at	11/11	6	+	9888300..9888719	hypothetical protein
LOC_Os06g17050	OsAffx.4856.1.S1_x_at	11/11	6	+	9888300..9888719	hypothetical protein
LOC_Os06g17050	OsAffx.11386.1.S1_x_at	1/11	6	+	9888300..9888719	hypothetical protein
LOC_Os06g17060	NA	NA	6	+	9889633..9890998	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.4856.1.S1_x_at	4/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.4856.1.S1_at	3/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.19821.1.S1_at	2/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.19821.1.S1_x_at	2/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.11386.1.S1_x_at	1/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17080	OsAffx.27681.1.S1_x_at	10/11	6	+	9903101..9904591	hypothetical protein
LOC_Os06g17080	OsAffx.27681.1.S1_at	10/11	6	+	9903101..9904591	hypothetical protein
LOC_Os06g17090	OsAffx.15468.1.S1_at	10/11	6	+	9909739..9910845	UDP-glycosyltransferase 89B2, putative
LOC_Os06g17100	OsAffx.7916.1.S1_at	1/11	6	+	9910973..9915273	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17100	Os.54806.1.S1_at	1/11	6	+	9910973..9915273	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17110	NA	NA	6	+	9915529..9915933	Cytokinin-O-glucosyltransferase 3, putative
LOC_Os06g17120	NA	NA	6	+	9920139..9921590	UDP-glycosyltransferase 89B2, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27681.1.S1_at--969--535	1	Chr06:9904055..9904531 (25 bp)	GAAGAGGTGCATGATGAGTTACTTT	LOC_Os06g17080
OsAffx.27681.1.S1_at--616--611	1	Chr06:9904052..9904528 (25 bp)	GAGGTGCATGATGAGTTACTTTTGC	LOC_Os06g17080
OsAffx.27681.1.S1_at--1160--629	4	Chr10:16233378..16233861 (25 bp)	GATGAGTTACTTTTGCATGCTTGCG	LOC_Os10g31610
OsAffx.27681.1.S1_at--67--71	5	Chr10:16233843..16233862 (20 bp)	ATGAGTTACTTTTGCATGCTTGCGA	LOC_Os10g31610
OsAffx.27681.1.S1_at--882--889	3	Chr10:16233843..16233863 (21 bp)	TGAGTTACTTTTGCATGCTTGCGAT	LOC_Os10g31610
OsAffx.27681.1.S1_at--987--819	1	Chr06:9903387..9903408 (22 bp)	GGAAGATATGAATCCTCATTTAAAT	LOC_Os06g17080
OsAffx.27681.1.S1_at--820--555	2	Chr06:9903348..9903372 (25 bp)	GAAACCAAATGGATCATACAATGTT	LOC_Os06g17080
OsAffx.27681.1.S1_at--735--601	1	Chr06:9903265..9903289 (25 bp)	GAGAGGAGTGTTGTGCACTATTAAA	LOC_Os06g17080
OsAffx.27681.1.S1_at--182--91	1	Chr06:9903262..9903286 (25 bp)	AGGAGTGTTGTGCACTATTAAATTC	LOC_Os06g17080
OsAffx.27681.1.S1_at--55--731	1	Chr06:9903253..9903277 (25 bp)	GTGCACTATTAAATTCAAAGGTCAA	LOC_Os06g17080
OsAffx.27681.1.S1_at--1039--11	1	Chr06:9903246..9903270 (25 bp)	ATTAAATTCAAAGGTCAAGTCTCGC	LOC_Os06g17080

Target Sequence

GAAGAGGTGCATGATGAGTTACTTTTGCATGCTTGCGATATTGAAAGTCAGATTGAGAAAGAAACAAAAATGCCTATGAT
ACATGAGAATATTCTTGTGCCTTCTATTGTATCTAACATCGTGCAGGAAGATATGAATCCTCATTTAAATATGGAAAAAT
ATGAGAAACCAAATGGATCATACAATGTTGATGCTATTGGAATAAATTCACCTAACGTTGTTTTAAATATTGATGACAAT
ATTCAAGGAGAGGAGTGTTGTGCACTATTAAATTCAAAGGTCAAGTCTCGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis