Browse Element(s) Details


OsAffx.11386.1.S1_x_at

Description tigr:9629.m03743
TID=OsAffx.11386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3932011/11hypothetical protein
LOC_Os12g254607/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g316204/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g202801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g170501/11hypothetical protein
LOC_Os06g170701/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39310Os.10934.1.S1_at11/111+22447167..22455562Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os01g39320OsAffx.11386.1.S1_x_at11/111+22461985..22462793hypothetical protein
LOC_Os01g39330Os.10316.1.S1_at11/111+22464891..22469257Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g39330Os.26054.1.S1_s_at11/111+22464891..22469257Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g39340OsAffx.23578.1.S1_at11/111+22471603..22471926hypothetical protein
LOC_Os01g39350OsAffx.21190.1.S1_x_at11/111+22473383..22475595Protein kinase domain containing protein
LOC_Os01g39350OsAffx.21190.2.S1_at9/111+22473383..22475595Protein kinase domain containing protein
LOC_Os01g39360Os.46995.1.S1_x_at3/111+22479061..22481207retrotransposon protein, putative, unclassified
LOC_Os01g39360Os.46995.1.S1_at2/111+22479061..22481207retrotransposon protein, putative, unclassified
LOC_Os01g39360OsAffx.20354.1.S1_at1/111+22479061..22481207retrotransposon protein, putative, unclassified
LOC_Os01g39370NANA1+22481641..22487640retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11386.1.S1_x_at--991--7676Chr12:14728948..14728972 (25 bp)
GGGTATATCTTTCTCCTACTGTTAA
LOC_Os12g25460
OsAffx.11386.1.S1_x_at--232--10196Chr12:14728951..14728975 (25 bp)
TATATCTTTCTCCTACTGTTAACTC
LOC_Os12g25460
OsAffx.11386.1.S1_x_at--1054--9539Chr12:14728955..14728979 (25 bp)
TCTTTCTCCTACTGTTAACTCATTC
LOC_Os12g25460
OsAffx.11386.1.S1_x_at--484--3814Chr12:9595075..9595099 (25 bp)
CTCCTACTGTTAACTCATTCTCTGA
NONE
OsAffx.11386.1.S1_x_at--353--6771Chr01:22462599..22462623 (25 bp)
GTTAACTCATTCTCTGATACCTCTG
LOC_Os01g39320
OsAffx.11386.1.S1_x_at--1082--2531Chr01:22462596..22462620 (25 bp)
AACTCATTCTCTGATACCTCTGTTA
LOC_Os01g39320
OsAffx.11386.1.S1_x_at--416--93Chr12:14728941..14729000 (25 bp)
ATTCTCTGATACCTCTGTTAGTCGT
LOC_Os12g25460
OsAffx.11386.1.S1_x_at--974--3771Chr01:22462588..22462612 (25 bp)
CTCTGATACCTCTGTTAGTCGTGTT
LOC_Os01g39320
OsAffx.11386.1.S1_x_at--285--6493Chr12:14728983..14729007 (25 bp)
GATACCTCTGTTAGTCGTGTTAGTC
LOC_Os12g25460
OsAffx.11386.1.S1_x_at--787--4293Chr12:14728987..14729011 (25 bp)
CCTCTGTTAGTCGTGTTAGTCGCAA
LOC_Os12g25460
OsAffx.11386.1.S1_x_at--181--6796Chr12:14728992..14729016 (25 bp)
GTTAGTCGTGTTAGTCGCAATTCTA
LOC_Os12g25460
Target Sequence 
GGGTATATCTTTCTCCTACTGTTAACTCATTCTCTGATACCTCTGTTAGTCGTGTTAGTCGCAATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11386.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis