Browse Element(s) Details


Os.54806.1.S1_at

Description gb:AK106806.1
DB_XREF= gi:32992015
TID=Os.54806.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C05, full insert sequence.
FL= gb:AK106806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0323011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g171001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03220OsAffx.10890.1.S1_x_at11/111+1298329..1299723hypothetical protein
LOC_Os01g03230Os.54806.1.S1_at11/111+1306654..1308370retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g03240Os.46986.1.S1_at3/111+1310038..1311076hypothetical protein
LOC_Os01g03250NANA1+1312070..1312279hypothetical protein
LOC_Os01g03260OsAffx.23093.2.S1_at10/111+1312625..1316665hypothetical protein
LOC_Os01g03270OsAffx.23096.1.S1_s_at11/111+1324974..1325971hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54806.1.S1_at--1045--10511Chr01:1307383..1307407 (25 bp)
TTCGATGAAACGTATGTCCCTGATG
LOC_Os01g03230
Os.54806.1.S1_at--116--6151Chr01:1307349..1307373 (25 bp)
GAGGTGCAGCAACTCATGCCTATGG
LOC_Os01g03230
Os.54806.1.S1_at--775--2131Chr01:1307290..1307314 (25 bp)
ACAGATCACATCACAAGCCAGCTTG
LOC_Os01g03230
Os.54806.1.S1_at--569--3152Chr06:9914014..9914033 (20 bp)
AATTCTTGAAGGTCCATGCCAGCGA
LOC_Os06g17100
Os.54806.1.S1_at--384--2411Chr01:1306952..1306976 (25 bp)
AAACAAGTCTTTGCAGTGTCGCCAT
LOC_Os01g03230
Os.54806.1.S1_at--155--3511Chr01:1306913..1306937 (25 bp)
CATGGTCATCTTGGGCATGCTTCAA
LOC_Os01g03230
Os.54806.1.S1_at--801--9051Chr01:1306896..1306920 (25 bp)
TGCTTCAAAGCCCATAGTCCTTAAG
LOC_Os01g03230
Os.54806.1.S1_at--98--3171Chr01:1306855..1306879 (25 bp)
AATTGCCATGCAGTAGTCTCCTAGT
LOC_Os01g03230
Os.54806.1.S1_at--550--7131Chr01:1306796..1306820 (25 bp)
GTCATCAGTTTCCTTTTCCTAAATC
LOC_Os01g03230
Os.54806.1.S1_at--1123--7951Chr01:1306747..1306771 (25 bp)
GGATCTTATTCACTCCGATGTATGG
LOC_Os01g03230
Os.54806.1.S1_at--102--8431Chr01:1306717..1306741 (25 bp)
GGCCTCCGATTCTGTTGGAGCTAAA
LOC_Os01g03230
Target Sequence 
TTCGATGAAACGTATGTCCCTGATGAAAAGATTGGAGGTGCAGCAACTCATGCCTATGGCATAGACACAAACTGGTATGT
AGATACTGGTGCAACAGATCACATCACAAGCCAGCTTGACAAGCTTACAACAAAGGAGAAATATCAAGGCACCGATCAGA
TCCACACGGCGAGTGGCGAAGGACAAGGCCATGAGGAGAATAATTCTTGAAGGTCCATGCCAGCGAGGACTCTATCCCCT
ACCCACCGGAGCACCAATAAAACAAGTCTTTGCAGTGTCGCCATCCTTCGAGCGGTGGCATGGTCATCTTGGGCATGCTT
CAAAGCCCATAGTCCTTAAGATTATTAGTCAAAATAAATTGCCATGCAGTAGTCTCCTAGTGAGTCTGTGTGTGATGCTT
GTCTTCAAGCAAAGTGTCATCAGTTTCCTTTTCCTAAATCCTCGAGTGTATCTAGTAATCCTTTGGATCTTATTCACTCC
GATGTATGGGGACCGGCCTCCGATTCTGTTGGAGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis