Browse Element(s) Details


OsAffx.10890.1.S1_x_at

Description tigr:9629.m00237
TID=OsAffx.10890.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0322011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03220OsAffx.10890.1.S1_x_at11/111+1298329..1299723hypothetical protein
LOC_Os01g03230Os.54806.1.S1_at11/111+1306654..1308370retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g03240Os.46986.1.S1_at3/111+1310038..1311076hypothetical protein
LOC_Os01g03250NANA1+1312070..1312279hypothetical protein
LOC_Os01g03260OsAffx.23093.2.S1_at10/111+1312625..1316665hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10890.1.S1_x_at--955--7551Chr01:1298359..1298383 (25 bp)
GGGCCGCGGTACGTGTGCAAGGTGT
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--901--9011Chr01:1298374..1298398 (25 bp)
TGCAAGGTGTGGACGCAGGCGCCGC
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--1101--7671Chr01:1298414..1298438 (25 bp)
GGGTCAAGGACACCATCATGATGGA
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--894--1731Chr01:1298425..1298449 (25 bp)
ACCATCATGATGGAGGCCAACGTGC
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--797--831Chr01:1298434..1298458 (25 bp)
ATGGAGGCCAACGTGCGGAGCTTCT
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--444--8011Chr01:1298436..1298460 (25 bp)
GGAGGCCAACGTGCGGAGCTTCTCC
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--895--8071Chr01:1298450..1298474 (25 bp)
GGAGCTTCTCCGTCCCCGGCGAGGT
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--891--7771Chr01:1298493..1298517 (25 bp)
GGTGCTGTGCGTGCCGCCGAGGATG
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--243--4071Chr01:1298510..1298534 (25 bp)
CGAGGATGCTCCACGGCGCGTCCAT
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--30--1951Chr01:1298522..1298546 (25 bp)
ACGGCGCGTCCATGGAGATGCCCCT
LOC_Os01g03220
OsAffx.10890.1.S1_x_at--1035--6371Chr01:1298588..1298612 (25 bp)
GATCCGCCATTGCAGCCCAGACAAA
LOC_Os01g03220
Target Sequence 
GGGCCGCGGTACGTGTGCAAGGTGTGGACGCAGGCGCCGCCGGACGCGGAGACGGGGGTCAAGGACACCATCATGATGGA
GGCCAACGTGCGGAGCTTCTCCGTCCCCGGCGAGGTCGCCATGGACGACGGCACGGTGCTGTGCGTGCCGCCGAGGATGC
TCCACGGCGCGTCCATGGAGATGCCCCTCCGCGTCCGCATCGACAAGCTCGGCGCCGGCACCACCAACCGATCCGCCATT
GCAGCCCAGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10890.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis