Browse Element(s) Details


OsAffx.23093.2.S1_at

Description tigr:9629.m00241
TID=OsAffx.23093.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0326010/11hypothetical protein
LOC_Os01g029601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03220OsAffx.10890.1.S1_x_at11/111+1298329..1299723hypothetical protein
LOC_Os01g03230Os.54806.1.S1_at11/111+1306654..1308370retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g03240Os.46986.1.S1_at3/111+1310038..1311076hypothetical protein
LOC_Os01g03250NANA1+1312070..1312279hypothetical protein
LOC_Os01g03260OsAffx.23093.2.S1_at10/111+1312625..1316665hypothetical protein
LOC_Os01g03270OsAffx.23096.1.S1_s_at11/111+1324974..1325971hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23093.2.S1_at--438--7711Chr01:1315416..1315440 (25 bp)
GGTGGTTTACAATGACCTTCCTTGC
LOC_Os01g03260
OsAffx.23093.2.S1_at--574--691Chr01:1315405..1315429 (25 bp)
ATGACCTTCCTTGCTTCTGACTTCA
LOC_Os01g03260
OsAffx.23093.2.S1_at--708--3312Chr01:1102732..1102755 (24 bp)
CACTTATCCAATACAAGCTTCCTTC
LOC_Os01g02960
OsAffx.23093.2.S1_at--657--10671Chr01:1314887..1314911 (25 bp)
TTCCTTCTCTTGTCTTAACCAATGA
LOC_Os01g03260
OsAffx.23093.2.S1_at--178--891Chr01:1314422..1314446 (25 bp)
AGGCAAGGTTCCTGCGTAAGCGGAT
LOC_Os01g03260
OsAffx.23093.2.S1_at--478--7611NONE
GGGCAAGCGGAACCAGATCCTCTGA
NONE
OsAffx.23093.2.S1_at--379--1333Chr03:26764753..26764773 (21 bp)
AGAGGGACGTCCAACGGCTCTGCTC
NONE
OsAffx.23093.2.S1_at--1017--9235Chr05:18279396..18279420 (25 bp)
TCCATTCGGCATCGGACGGAGTCGA
NONE
OsAffx.23093.2.S1_at--1059--271Chr01:1312908..1312932 (25 bp)
ATAGGCTCGGCCCATATGGCAGAAA
LOC_Os01g03260
OsAffx.23093.2.S1_at--247--5532Chr05:18279455..18279479 (25 bp)
GAAAAAACAGCCCACGCGGTATCGA
NONE
OsAffx.23093.2.S1_at--245--1671Chr01:1312842..1312866 (25 bp)
AGCCGGCTCCGCTAGGAAGCAAATG
LOC_Os01g03260
Target Sequence 
GGTGGTTTACAATGACCTTCCTTGCTTCTGACTTCAGTGCATACCTACAAGATCGCCAGAATTATTTCATAGTGGTTTCA
CTTATCCAATACAAGCTTCCTTCTCTTGTCTTAACCAATGAAAAAATGCTGAAGCAGCAGGCAAGGTTCCTGCGTAAGCG
GATGAGCAGCAGGCAAGCTGGTAGGAGCAAGCGCCAAGGGCAAGCGGAACCAGATCCTCTGACGTCAGAGGGACGTCCAA
CGGCTCTGCTCCGTCCATTCGGCATCGGACGGAGTCGAGCGAGCACAGCGGATAGGCTCGGCCCATATGGCAGAAAAAAC
AGCCCACGCGGTATCGACGCCACCTCTGAGCCACAGCAGCCGGCTCCGCTAGGAAGCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23093.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis