Browse Element(s) Details

Os.12713.1.S2_a_at

Description

gb:AK060800.1
DB_XREF= gi:32970818
TID=Os.12713.1
CNT=170
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12713 (NCBI UniGene Cluster)
UG_TITLE=Chlorophyll ab-binding protein precursor (Cab26) mRNA, nuclear gene encoding chloroplast protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F04, full insert sequence.
FL= gb:AF094776.1 gb:AK098864.1 gb:AK060800.1 gb:AK060904.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g03320	11/11	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g03260	OsAffx.23093.2.S1_at	10/11	1	+	1312625..1316665	hypothetical protein
LOC_Os01g03270	OsAffx.23096.1.S1_s_at	11/11	1	+	1324974..1325971	hypothetical protein
LOC_Os01g03280	OsAffx.24595.2.S1_at	11/11	1	+	1327606..1329200	hypothetical protein
LOC_Os01g03280	OsAffx.24595.1.S1_s_at	11/11	1	+	1327606..1329200	hypothetical protein
LOC_Os01g03280	OsAffx.24595.2.S1_x_at	11/11	1	+	1327606..1329200	hypothetical protein
LOC_Os01g03290	OsAffx.22807.1.S1_at	11/11	1	+	1330554..1331541	Seven in absentia protein family protein
LOC_Os01g03290	OsAffx.23096.1.S1_s_at	1/11	1	+	1330554..1331541	Seven in absentia protein family protein
LOC_Os01g03300	OsAffx.23097.1.S1_at	11/11	1	+	1332666..1334209	Seven in absentia protein family protein
LOC_Os01g03310	Os.32459.1.S1_at	11/11	1	+	1335041..1335900	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310	Os.32459.2.S1_x_at	5/11	1	+	1335041..1335900	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320	Os.12713.1.S2_a_at	11/11	1	+	1338128..1339079	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320	Os.32459.2.S1_x_at	6/11	1	+	1338128..1339079	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320	OsAffx.4805.1.S1_at	1/11	1	+	1338128..1339079	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330	Os.19472.1.S1_at	10/11	1	+	1341395..1343017	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330	Os.32459.2.S1_x_at	1/11	1	+	1341395..1343017	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340	Os.4653.1.S1_at	11/11	1	+	1344403..1345525	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340	Os.37729.1.S1_s_at	11/11	1	+	1344403..1345525	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350	NA	NA	1	+	1347622..1347909	hypothetical protein
LOC_Os01g03360	Os.37729.1.S1_s_at	11/11	1	+	1350456..1351604	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360	Os.32459.2.S1_x_at	1/11	1	+	1350456..1351604	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370	OsAffx.10893.1.S1_x_at	11/11	1	+	1353403..1358059	Protein kinase domain containing protein
LOC_Os01g03370	OsAffx.10893.2.S1_at	11/11	1	+	1353403..1358059	Protein kinase domain containing protein
LOC_Os01g03380	OsAffx.22805.1.S1_at	7/11	1	+	1360512..1361069	Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390	Os.22594.1.S1_at	11/11	1	+	1362345..1363244	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390	Os.32459.2.S1_x_at	1/11	1	+	1362345..1363244	Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12713.1.S2_a_at--285--211	1	Chr01:1338481..1338505 (25 bp)	ACATGGTGAATTCGTCGTCGGAGCC	LOC_Os01g03320
Os.12713.1.S2_a_at--518--841	1	Chr01:1338415..1338439 (25 bp)	GGCCCATGTGCGCATGAACTGATTA	LOC_Os01g03320
Os.12713.1.S2_a_at--172--475	1	Chr01:1338366..1338390 (25 bp)	GCTGATTATATTGATCCTTTCACCA	LOC_Os01g03320
Os.12713.1.S2_a_at--935--33	1	Chr01:1338341..1338365 (25 bp)	ATAAATATATGTTCGCGTCGTTCGC	LOC_Os01g03320
Os.12713.1.S2_a_at--508--939	1	Chr01:1338314..1338338 (25 bp)	TCGATCGAACGATCAGTCTGCGTGT	LOC_Os01g03320
Os.12713.1.S2_a_at--1127--643	1	Chr01:1338304..1338328 (25 bp)	GATCAGTCTGCGTGTGTTCTAGCTT	LOC_Os01g03320
Os.12713.1.S2_a_at--75--673	1	Chr01:1338289..1338313 (25 bp)	GTTCTAGCTTGTTCGTATTCGTACA	LOC_Os01g03320
Os.12713.1.S2_a_at--997--699	1	Chr01:1338261..1338285 (25 bp)	GTACGTGTGTACAATTTGTCTGTGT	LOC_Os01g03320
Os.12713.1.S2_a_at--807--389	1	Chr01:1338242..1338266 (25 bp)	CTGTGTGTTGTGTCTATCGTGTGGT	LOC_Os01g03320
Os.12713.1.S2_a_at--511--1077	1	Chr01:1338217..1338241 (25 bp)	TTGATGTTGGTATGCGTGTTATGTC	LOC_Os01g03320
Os.12713.1.S2_a_at--522--741	1	Chr01:1338202..1338226 (25 bp)	GTGTTATGTCATGTGTTACGAAGTT	LOC_Os01g03320

Target Sequence

ACATGGTGAATTCGTCGTCGGAGCCGCCTCGCTATATCTGCCGCGACCACTTCACCGGCGAGCCCGGGCCCATGTGCGCA
TGAACTGATTAACTATAGCTANCTATATCAAGCTAGCTGATTATATTGATCCTTTCACCAATAAATATATGTTCGCGTCG
TTCGCGATCGATCGAACGATCAGTCTGCGTGTGTTCTAGCTTGTTCGTATTCGTACATACGTACGTGTGTACAATTTGTC
TGTGTGTTGTGTCTATCGTGTGGTTTGATGTTGGTATGCGTGTTATGTCATGTGTTACGAAGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis