Browse Element(s) Details


Os.37729.1.S1_s_at

Description gb:AB098712.1
DB_XREF= gi:32188026
GEN=ti
TID=Os.37729.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.37729 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ti mRNA for trypsin inhibitor, complete cds.
PROD=trypsin inhibitor
FL= gb:U76004.1 gb:AB098712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0336011/11Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g0334011/11Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03270OsAffx.23096.1.S1_s_at11/111+1324974..1325971hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.1.S1_s_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03280OsAffx.24595.2.S1_x_at11/111+1327606..1329200hypothetical protein
LOC_Os01g03290OsAffx.22807.1.S1_at11/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03290OsAffx.23096.1.S1_s_at1/111+1330554..1331541Seven in absentia protein family protein
LOC_Os01g03300OsAffx.23097.1.S1_at11/111+1332666..1334209Seven in absentia protein family protein
LOC_Os01g03310Os.32459.1.S1_at11/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03310Os.32459.2.S1_x_at5/111+1335041..1335900Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.12713.1.S2_a_at11/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320Os.32459.2.S1_x_at6/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03320OsAffx.4805.1.S1_at1/111+1338128..1339079Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.19472.1.S1_at10/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03330Os.32459.2.S1_x_at1/111+1341395..1343017Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.4653.1.S1_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03340Os.37729.1.S1_s_at11/111+1344403..1345525Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03350NANA1+1347622..1347909hypothetical protein
LOC_Os01g03360Os.37729.1.S1_s_at11/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03360Os.32459.2.S1_x_at1/111+1350456..1351604Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03370OsAffx.10893.1.S1_x_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03370OsAffx.10893.2.S1_at11/111+1353403..1358059Protein kinase domain containing protein
LOC_Os01g03380OsAffx.22805.1.S1_at7/111+1360512..1361069Bowman-Birk type bran trypsin inhibitor precursor, putative
LOC_Os01g03390Os.22594.1.S1_at11/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03390Os.32459.2.S1_x_at1/111+1362345..1363244Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
LOC_Os01g03400OsAffx.10894.1.S1_at11/111+1365693..1366594Ubiquitin ligase sina, putative
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37729.1.S1_s_at--190--9032Chr01:1350930..1350954 (25 bp)
TGCAACAAGATGAACCCGCCGACCT
LOC_Os01g03360
Os.37729.1.S1_s_at--10--532Chr01:1350746..1350770 (25 bp)
ATCGATGATCGATCTGTGTGTCCAT
LOC_Os01g03360
Os.37729.1.S1_s_at--895--6392Chr01:1350740..1350764 (25 bp)
GATCGATCTGTGTGTCCATCAATAA
LOC_Os01g03360
Os.37729.1.S1_s_at--678--3832Chr01:1350733..1350757 (25 bp)
CTGTGTGTCCATCAATAAAACTCGC
LOC_Os01g03360
Os.37729.1.S1_s_at--484--10532Chr01:1350681..1350705 (25 bp)
TTCGATCATTCAGAGTTGGTATAGC
LOC_Os01g03360
Os.37729.1.S1_s_at--144--10512Chr01:1350673..1350697 (25 bp)
TTCAGAGTTGGTATAGCTAGAGGCT
LOC_Os01g03360
Os.37729.1.S1_s_at--114--1372Chr01:1350648..1350672 (25 bp)
AGAGCTTAGCTCCATCCAGATTTTT
LOC_Os01g03360
Os.37729.1.S1_s_at--948--9992Chr01:1350642..1350666 (25 bp)
TAGCTCCATCCAGATTTTTCAGTGC
LOC_Os01g03360
Os.37729.1.S1_s_at--182--10372Chr01:1350628..1350652 (25 bp)
TTTTTCAGTGCTCTGCAGCTTTTGT
LOC_Os01g03360
Os.37729.1.S1_s_at--181--5072Chr01:1350614..1350638 (25 bp)
GCAGCTTTTGTGCATCTTGCATGCT
LOC_Os01g03360
Os.37729.1.S1_s_at--374--6872Chr01:1350583..1350607 (25 bp)
GTTTGTGTGCTCCATGTGTGTGGGT
LOC_Os01g03360
Target Sequence 
TGCAACAAGATGAACCCGCCGACCTGCCGCTGCATGGACGAGGTGAAGGAGTGCGCCGACGCGTGCAAGGATTGCCAGCG
CGTGGAGTCGTCGGAGCCGCCTCGCTACGTCTGCAAGGACCGCTTCACCGGCCATCCCGGCCCCGTGTGCAAACCCCGAG
CGGAGAACTAGCTAGCTACAGATGATCGATGATCGATCTGTGTGTCCATCAATAAAACTCGCCCTAGCTTGCAGCTAGCT
GATCGTTCGTTCGATCATTCAGAGTTGGTATAGCTAGAGGCTAGAGCTTAGCTCCATCCAGATTTTTCAGTGCTCTGCAG
CTTTTGTGCATCTTGCATGCTTTGTTAGTTTGTGTGCTCCATGTGTGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37729.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis