Browse Element(s) Details


OsAffx.23100.1.S1_at

Description tigr:9629.m00258
TID=OsAffx.23100.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0346411/11hypothetical protein
LOC_Os01g0342911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03410Os.17213.1.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03410OsAffx.25095.5.S1_x_at1/111+1369765..1370940hypothetical protein
LOC_Os01g03420OsAffx.10592.1.S1_at10/111+1371971..1374044Seven in absentia protein family protein
LOC_Os01g03429OsAffx.23100.1.S1_x_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03429OsAffx.23100.1.S1_at11/111+1376493..1378945hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_at8/111+1380448..1381886hypothetical protein
LOC_Os01g03440OsAffx.11270.1.S1_x_at7/111+1380448..1381886hypothetical protein
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_x_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03480OsAffx.23101.2.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.2.S1_s_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.1.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03490Os.962.1.S1_at11/111+1401617..1403989heavy metal-associated domain containing protein, expressed
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23100.1.S1_at--988--9432Chr01:1378497..1378521 (25 bp)
TCGGCGTCCCGCTCCAGGAAGGCAA
LOC_Os01g03429
OsAffx.23100.1.S1_at--833--3812Chr01:1378508..1378532 (25 bp)
CTCCAGGAAGGCAAGCGGGTCCTCA
LOC_Os01g03429
OsAffx.23100.1.S1_at--943--2672Chr01:1378520..1378544 (25 bp)
AAGCGGGTCCTCAGCCTCCTGGACG
LOC_Os01g03429
OsAffx.23100.1.S1_at--925--7172Chr01:1378607..1378631 (25 bp)
GTCGGCACCGTTCTCGCCGTGGAGG
LOC_Os01g03429
OsAffx.23100.1.S1_at--1109--4212Chr01:1378658..1378682 (25 bp)
CCGAGGTTCGAGTGCAAAGTGTCGT
LOC_Os01g03429
OsAffx.23100.1.S1_at--94--1132Chr01:1378668..1378692 (25 bp)
AGTGCAAAGTGTCGTTCGACCGCCG
LOC_Os01g03429
OsAffx.23100.1.S1_at--97--7532Chr01:1378702..1378726 (25 bp)
GTGGCGGCAGTCGTCGACGTTCGGC
LOC_Os01g03429
OsAffx.23100.1.S1_at--37--1392Chr01:1378733..1378757 (25 bp)
AGCACGAACCTCTCCGGTGGGTTGC
LOC_Os01g03429
OsAffx.23100.1.S1_at--53--7912Chr01:1378752..1378776 (25 bp)
GGTTGCCGGCGGACGGCTTCGCGTT
LOC_Os01g03429
OsAffx.23100.1.S1_at--644--152Chr01:1378832..1378856 (25 bp)
ATCTCCTCCGGAGAACCTGGCAGTG
LOC_Os01g03429
OsAffx.23100.1.S1_at--220--8072Chr01:1378841..1378865 (25 bp)
GGAGAACCTGGCAGTGCTCTCCGTC
LOC_Os01g03429
Target Sequence 
TCGGCGTCCCGCTCCAGGAAGGCAAGCGGGTCCTCAGCCTCCTGGACGACGACGGCCGCGGCAGCCACCTGTTCCTGCTC
AACGTCGCGCAGGCCGGCGAGGCCGGCCTCGTCGGCACCGTTCTCGCCGTGGAGGCGGCGGCCCACGGGCACGGCGACGC
GCCGAGGTTCGAGTGCAAAGTGTCGTTCGACCGCCGTGGCACGGGGTGGCGGCAGTCGTCGACGTTCGGCGTGAGGAGCA
CGAACCTCTCCGGTGGGTTGCCGGCGGACGGCTTCGCGTTCGTGGCGCCCAATCCGCCTCCCGCCGCCGCCAGCGTCACC
ATCACCCTCTTCGACATCTCCTCCGGAGAACCTGGCAGTGCTCTCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis