Browse Element(s) Details


Os.965.1.S1_at

Description gb:AK103631.1
DB_XREF= gi:32988840
TID=Os.965.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0037C04.30 (P0037C04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133P14, full insert sequence.
FL= gb:AK103631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0352011/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03464OsAffx.23100.1.S1_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_x_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03480OsAffx.23101.2.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.2.S1_s_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.1.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03490Os.962.1.S1_at11/111+1401617..1403989heavy metal-associated domain containing protein, expressed
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03530Os.23181.1.S1_at11/111+1430798..1433611Multicopper oxidase family protein, expressed
LOC_Os01g03549Os.50498.1.S1_at11/111+1433965..1442401Spore coat protein A, putative, expressed
LOC_Os01g03570Os.26958.1.S1_at11/111+1443664..1447275X1, putative, expressed
LOC_Os01g03580NANA1+1448279..1451484transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.965.1.S1_at--787--9651Chr01:1424373..1424397 (25 bp)
TCAGAAAGATGATCACCTCACCTGC
LOC_Os01g03520
Os.965.1.S1_at--393--3371Chr01:1424391..1424415 (25 bp)
CACCTGCTGTTTTTCGTATAAATGT
LOC_Os01g03520
Os.965.1.S1_at--863--4371Chr01:1424465..1424489 (25 bp)
CCAAATGTGTTCATCTCTTCTCAAC
LOC_Os01g03520
Os.965.1.S1_at--17--2571Chr01:1424487..1424511 (25 bp)
AACTGGGAGCTTGAGCTGCCCTGTA
LOC_Os01g03520
Os.965.1.S1_at--653--1592Chr09:3524528..3524751 (25 bp)
AGCTGCCCTGTACAGTTTGTTTTTG
NONE
Os.965.1.S1_at--598--6711Chr01:1424538..1424562 (25 bp)
GTTCGTTATGGCCAGGATAGTATGC
LOC_Os01g03520
Os.965.1.S1_at--1135--9651Chr01:1424631..1424655 (25 bp)
TCACCGAGTAAACCGTAGACAAGTA
LOC_Os01g03520
Os.965.1.S1_at--1018--231Chr01:1424684..1424708 (25 bp)
ATATACGGTCGTTCATCAGCTTCTT
LOC_Os01g03520
Os.965.1.S1_at--876--1551Chr01:1424701..1424725 (25 bp)
AGCTTCTTCACATGCTGTAATGGTG
LOC_Os01g03520
Os.965.1.S1_at--1159--9751Chr01:1424718..1424742 (25 bp)
TAATGGTGAACTGGTATTACCTCAT
LOC_Os01g03520
Os.965.1.S1_at--453--6351Chr01:1424811..1424835 (25 bp)
GATGCTGGTGAACGAATTTCTGGAT
LOC_Os01g03520
Target Sequence 
TCAGAAAGATGATCACCTCACCTGCTGTTTTTCGTATAAATGTACATTACATTTGTTTCTTGTTTCTATTTAAACATTTG
GAAAATTTGGTTCCAAATGTGTTCATCTCTTCTCAACTGGGAGCTTGAGCTGCCCTGTACAGTTTGTTTTTGTTAAGCTT
GCNGGGTTCGTTATGGCCAGGATAGTATGCNAATTCTGAACCGGGCCTAGAATTNCCAGGAATAGAGATGTGAAATCTAA
TGGATNGTATAATTCCCCTCACCGAGTAAACCGTAGACAAGTAATTCACCGGNCTATGTTCATGTTTACTGATATACGGT
CGTTCATCAGCTTCTTCACATGCTGTAATGGTGAACTGGTATTACCTCATTTTCATTTTTTGATTGAATGCTAAGTTGAG
AATAGTGGGTGATAATGGACACTGCCATGGAAACATTTGATGCTGGTGAACGAATTTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis